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Report for CCDS29840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29840.1 Public Mus musculus 19 Cpn1 23 108 98 CCDS HistoryNCBI Gene:93721Re-query CCDS DB by CCDS ID:29840.1Re-query CCDS DB by GeneID:93721See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026210.4 ENSMUSP00000026210.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026210.4Link to Ensembl Protein Viewer:ENSMUSP00000026210.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026210Re-query CCDS DB by Protein ID:ENSMUSP00000026210
Original member Current member NCBI NM_030703.2 NP_109628.1 Accepted alive Link to Nucleotide Sequence:NM_030703.2Link to Protein Sequence:NP_109628.1Re-query CCDS DB by Nucleotide ID:NM_030703Re-query CCDS DB by Protein ID:NP_109628Link to BLAST:NP_109628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109628.1 457 Q9JJN5 457 100% 0 0

Chromosomal Locations for CCDS 29840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43956493 43956636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43959986 43960104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43963731 43963830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43966175 43966314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43968453 43968564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43970002 43970184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43973933 43974088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43980803 43980999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43986066 43986288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGCCAGACCTGCCCTCAGCCTTCCTGCCCCTCCTCCTCCTCTCCAAGTTTGTTACCCCGGTGACCTTTC
GTCACCACCGCTACGACGACCTCGTGCGGACGCTGTACAAGGTGCACAACCAATGCCCGGACATCACGCG
GCTCTACAACATCGGGCGCAGTGTGAAGGGGAGGTACCTCTACGTGCTGGAGTTTAGCGACTACCCTGGG
ATCCATGAACCCTTGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCG
AGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCT
CATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG
GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCC
CGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGA
CAACTGGAAAAGTCAGGTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTT
CTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGT
TTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACGCTGGCCAAGGT
CTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACC
AACGGGGCGTCCTGGTATTCTCTCAGCAAGGGAATGCAAGACTTCAATTATCTCCACACTAACTGCTTTG
AGATCACGCTCGAGCTGAGTTGCGACAAGTTTCCCCGGCAAGAGGAGCTGCAGAGGGAGTGGCTGGGTAA
CCGGGAAGCCTTAATCCAGTTCTTGGAACAGGTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAAC
TCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAGGTGAACATG
GGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAA
AACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTGGTTGACTTCCAACTCAAGCGAAGCTCATCT
CAGGTGTACCCTGTGCAGAGAGCTCCCGGCCGAGGGCAGGGAGGCAGGGCAAAGCAGCCCCGGACATCCA
GAAAGAAAGACCCAGCAACGAAACGGCATAGGGGTCCTGCATGA

Translation (457 aa):
MPDLPSAFLPLLLLSKFVTPVTFRHHRYDDLVRTLYKVHNQCPDITRLYNIGRSVKGRYLYVLEFSDYPG
IHEPLEPEVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNRNQRILRLIQDTRIHILPSMNPDGYEVAAAQ
GPNMSGYLVGRNNANGVDLNRNFPDLNTYFYYNSKNGGPNHHLPLPDNWKSQVEPETRAVIQWIRSLNFV
LSANMHGGAVVANYPYDKSLEHRFRGPHRTSNSPTPDDELFQTLAKVYSYAHGWMHQGWNCGDYFPDGIT
NGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPRQEELQREWLGNREALIQFLEQVHQGIKGMVLDEN
SNNLTGAVISVTGINHDVTSGEHGDYFRLLLPGTYSVTAKAPGYDPKTVTVTVGPAGPTVVDFQLKRSSS
QVYPVQRAPGRGQGGRAKQPRTSRKKDPATKRHRGPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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