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Report for CCDS29827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29827.1 Public Mus musculus 19 Golga7b 23 108 98 CCDS HistoryNCBI Gene:71146Re-query CCDS DB by CCDS ID:29827.1Re-query CCDS DB by GeneID:71146See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29827.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087123.5 ENSMUSP00000084362.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087123.5Link to Ensembl Protein Viewer:ENSMUSP00000084362.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087123Re-query CCDS DB by Protein ID:ENSMUSP00000084362
Original member Current member EBI ENSMUST00000122375.7 ENSMUSP00000112575.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122375.7Link to Ensembl Protein Viewer:ENSMUSP00000112575.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122375Re-query CCDS DB by Protein ID:ENSMUSP00000112575
Original member Current member NCBI NM_001141983.1 NP_001135455.1 Accepted alive Link to Nucleotide Sequence:NM_001141983.1Link to Protein Sequence:NP_001135455.1Re-query CCDS DB by Nucleotide ID:NM_001141983Re-query CCDS DB by Protein ID:NP_001135455Link to BLAST:NP_001135455.1
Original member Current member NCBI NM_027694.2 NP_081970.1 Accepted alive Link to Nucleotide Sequence:NM_027694.2Link to Protein Sequence:NP_081970.1Re-query CCDS DB by Nucleotide ID:NM_027694Re-query CCDS DB by Protein ID:NP_081970Link to BLAST:NP_081970.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135455.1 167 Q9D428 167 100% 0 0
NP_081970.1 167 Q9D428 167 100% 0 0

Chromosomal Locations for CCDS 29827.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42256172 42256183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42263329 42263454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42266751 42266903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42266977 42267078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42268352 42268462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGCCACTGAGGTCCACAATCTTCAGGAGCTCAGGCGAAGCGCTTCGCTGGCCACCAAGGTCTTTATCC
AGAGAGACTACAGTGACGGCACCATCTGTCAGTTCCAGACCAAATTCCCGCCAGAGCTGGATAGCCGGAT
TGAGCGGCAGCTCTTTGAGGAGACGGTGAAGACCCTCAATGGTTTTTATGCGGAGGCTGAGAAGATCGGG
GGCAGCTCCTATCTGGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCC
ACTATGAGAAGGTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCG
AGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTTATCGAGATCTCCATCTATGAGGACCGG
TGCAGCAGTGGTAGTTCCAGTAGCGGCAGCAGCAGCGGCAGCGGCAGCAGCAGCGCTGGCGGGGGAGGGG
CGGGGGCCCGGTGA

Translation (167 aa):
MATEVHNLQELRRSASLATKVFIQRDYSDGTICQFQTKFPPELDSRIERQLFEETVKTLNGFYAEAEKIG
GSSYLEGCLACATAYFIFLCMETHYEKVLKKISRYIQEQNEKVFAPRGLLLTDPVERGMRVIEISIYEDR
CSSGSSSSGSSSGSGSSSAGGGGAGAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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