NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29770.1 Public Mus musculus 19 Rpp30 23 108 98 CCDS HistoryNCBI Gene:54364Re-query CCDS DB by CCDS ID:29770.1Re-query CCDS DB by GeneID:54364See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025714.8 ENSMUSP00000025714.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025714.8Link to Ensembl Protein Viewer:ENSMUSP00000025714.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025714Re-query CCDS DB by Protein ID:ENSMUSP00000025714
Original member NCBI NM_019428.3 NP_062301.3 Updated not alive Link to Nucleotide Sequence:NM_019428.3Link to Protein Sequence:NP_062301.3Re-query CCDS DB by Nucleotide ID:NM_019428Re-query CCDS DB by Protein ID:NP_062301
Current member NCBI NM_019428.4 NP_062301.3 Accepted alive Link to Nucleotide Sequence:NM_019428.4Link to Protein Sequence:NP_062301.3Re-query CCDS DB by Nucleotide ID:NM_019428Re-query CCDS DB by Protein ID:NP_062301Link to BLAST:NP_062301.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062301.3 268 O88796 268 100% 0 0

Chromosomal Locations for CCDS 29770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 36083737 36083818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36085066 36085121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36086959 36087015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36087324 36087398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36089139 36089210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36094376 36094465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36100172 36100288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36100809 36100838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36101234 36101271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36101821 36101900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36104336 36104445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGCGGCGTTCGCAGATTTGGATTTAAGAGCGGGCTCAGACCTGAAGGCTCTGCGCGGACTCGTGGAGA
CTGCTGCTCACCTGGGATACTCAGTTGTTGCCATCAATCACATTGTTGACTTTAAGGAAAAGAAACGGGA
AATTGAAAAGCCAATAGCAGTTTCTGAACTCTTCACAACTTTACCCATCGTACAGGGAAAATCAAGACCA
ATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTGAGAGCAACTT
CGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCATGTTGCTTG
TACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCC
CCTGTTAATGTGGCAATTGAGCGAGGCCTGGGCTTTGAACTTGTCTATGGTCCTGCTATCAGAGATGCAA
CGATGAGAAGGTACACAATCTCCAATGCCCTCAATTTGATGCAGATCTGCAAAGGAAAGAATGTAATTCT
GTCCAGTGCTGCAGAAAGGCCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTTAGGACTGCTGTTT
GGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAGAAA
CTAGAAAAACTGCTTTTGGAATTATTTCTACAGTGAAGAAACCACGGCCATCAGAAGCAGATGATGAATC
TCTTCCAGTGTGCAAGAAAGCTAAATGTGAGGGCTGA

Translation (268 aa):
MAAFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKREIEKPIAVSELFTTLPIVQGKSRP
IKILTRLTIIVTDPAHCNVLRATSSRVRLYDIVAVFPKTEKLFHVACTHLDVDLVCITVTEKLPFYFKRP
PVNVAIERGLGFELVYGPAIRDATMRRYTISNALNLMQICKGKNVILSSAAERPLEIRGPYDVANLGLLF
GLSENDGKAAVSTNCRAVFLHGETRKTAFGIISTVKKPRPSEADDESLPVCKKAKCEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH