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Report for CCDS29684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29684.1 Public Mus musculus 19 Gnaq 23 108 98 CCDS HistoryNCBI Gene:14682Re-query CCDS DB by CCDS ID:29684.1Re-query CCDS DB by GeneID:14682See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025541.5 ENSMUSP00000025541.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025541.5Link to Ensembl Protein Viewer:ENSMUSP00000025541.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025541Re-query CCDS DB by Protein ID:ENSMUSP00000025541
Original member Current member NCBI NM_008139.6 NP_032165.3 Accepted alive Link to Nucleotide Sequence:NM_008139.6Link to Protein Sequence:NP_032165.3Re-query CCDS DB by Nucleotide ID:NM_008139Re-query CCDS DB by Protein ID:NP_032165Link to BLAST:NP_032165.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032165.3 359 P21279 359 100% 0 0

Chromosomal Locations for CCDS 29684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 16133326 16133461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16219588 16219772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16316017 16316171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16332077 16332205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16334981 16335110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16378157 16378310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16383204 16383394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGACTCTGGAGTCCATCATGGCGTGCTGCCTGAGCGAGGAGGCCAAGGAAGCCCGGAGGATCAACGACG
AGATCGAGCGGCAGCTGCGCAGGGACAAGCGCGACGCCCGCCGGGAGCTCAAGCTGCTGCTGCTGGGGAC
AGGGGAGAGTGGCAAGAGCACCTTCATCAAGCAGATGAGGATCATCCACGGGTCGGGCTACTCTGACGAA
GACAAGCGCGGCTTCACCAAGCTGGTGTATCAGAACATCTTCACGGCCATGCAGGCCATGATCAGAGCGA
TGGACACGCTCAAGATCCCATACAAGTATGAACACAATAAGGCTCATGCACAATTGGTTCGAGAGGTTGA
TGTGGAGAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCTTGTGGAATGATCCTGGA
ATCCAGGAGTGCTACGACAGACGACGGGAATATCAGTTATCTGACTCTACCAAATACTATCTGAATGACT
TGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTAC
AGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAGAATGGTCGATGTAGGGGGCCAAAGG
TCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCG
AATATGATCAAGTTCTTGTGGAGTCAGACAATGAGAACCGCATGGAGGAGAGCAAAGCACTCTTTAGAAC
AATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAG
GAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATGGACCCCAGAGAGATGCCCAGG
CAGCTCGAGAATTCATCCTGAAAATGTTCGTGGACCTGAACCCCGACAGTGACAAAATCATCTACTCCCA
CTTCACGTGCGCCACAGATACCGAGAACATCCGCTTCGTCTTTGCAGCCGTCAAGGACACCATCCTGCAG
CTGAACCTGAAGGAGTACAATCTGGTCTAA

Translation (359 aa):
MTLESIMACCLSEEAKEARRINDEIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDE
DKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPG
IQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQR
SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE
EKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ
LNLKEYNLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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