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Report for CCDS29638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29638.1 Public Mus musculus 19 Lpxn 23 108 98 CCDS HistoryNCBI Gene:107321Re-query CCDS DB by CCDS ID:29638.1Re-query CCDS DB by GeneID:107321See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29638.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025601.7 ENSMUSP00000025601.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025601.7Link to Ensembl Protein Viewer:ENSMUSP00000025601.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025601Re-query CCDS DB by Protein ID:ENSMUSP00000025601
Original member Current member NCBI NM_134152.4 NP_598913.1 Accepted alive Link to Nucleotide Sequence:NM_134152.4Link to Protein Sequence:NP_598913.1Re-query CCDS DB by Nucleotide ID:NM_134152Re-query CCDS DB by Protein ID:NP_598913Link to BLAST:NP_598913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598913.1 386 Q99N69 386 100% 0 0

Chromosomal Locations for CCDS 29638.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12798667 12798679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12803933 12804090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12811220 12811266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12819336 12819435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12823944 12824111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12824799 12824972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12825090 12825171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12832608 12832756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12833085 12833354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGAAGAGCTGGATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAA
ATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTT
GTCATCGCAGGGTAACACAAGTCCCTTGAAGGTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAAT
GTCTACAGTGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGG
ATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAGGTTTCAGTGAAAGCAGACACCAGCAGGAAACC
CTTGCCAGACCAGCAGGATCACAAGGCATCTCTGGACTCAATGCTGGGGGACTTGGAACAGGAACTACAA
GATCTTGGGATTGCCACAGTCCCCAAGGGCTACTGTGCTTCCTGCCAGAAGCCAATTGCTGGGAAGGTGA
TCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTC
CAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGC
TGTGCCTACTGTGCTGCTCCCATCACAGATAAAGTGCTGACAGCAATGAACAAGACATGGCACCCAGAGC
ACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAGGCTTTCATGAGAAGGACAAGAAGCCATA
CTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAAC
TACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGGGACTGCTTCAGTAGTTTTT
CTTCTGGCTCCTTCTTTGAACTGGATGGCCGTCCTTTCTGTGAACTCCATTACCATCACCGCCGAGGGAC
CCTCTGCCATGACTGTGGGCAGCCCATCACTGGCCGTTGCATCAGTGCCATGGGACATAAATTTCATCCT
GAGCACTTCGTGTGTGCTTTCTGCCTGACACAGCTGCCGAAAGGCATCTTCAAGGAGCAGAACAACAAGA
CCTACTGTGAAAAATGCTTCACTAAGCTCTTTTCACAGTAG

Translation (386 aa):
MEELDALLEELERCTFQDSEEYSNPVSCHLDQQSTEESKIPQTPKTLSSQGNTSPLKVQLVYATNIQEPN
VYSEVQEPKESVLPPKTSAAAQLDELMAHLSEMQAKVSVKADTSRKPLPDQQDHKASLDSMLGDLEQELQ
DLGIATVPKGYCASCQKPIAGKVIHALGQSWHPEHFVCTHCKEELGSSPFFERSGLAYCSKDYHRLFSPR
CAYCAAPITDKVLTAMNKTWHPEHFFCSHCGEVFGAEGFHEKDKKPYCRKDFLAMFSPKCGGCNRPVLEN
YLSAMNTVWHPECFVCGDCFSSFSSGSFFELDGRPFCELHYHHRRGTLCHDCGQPITGRCISAMGHKFHP
EHFVCAFCLTQLPKGIFKEQNNKTYCEKCFTKLFSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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