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Report for CCDS29612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29612.1 Public Mus musculus 19 Stx3 23 108 98 CCDS HistoryNCBI Gene:20908Re-query CCDS DB by CCDS ID:29612.1Re-query CCDS DB by GeneID:20908See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29612.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000211641.1 ENSMUSP00000147398.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211641.1Link to Ensembl Protein Viewer:ENSMUSP00000147398.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211641Re-query CCDS DB by Protein ID:ENSMUSP00000147398
Original member Current member NCBI NM_011502.4 NP_035632.1 Accepted alive Link to Nucleotide Sequence:NM_011502.4Link to Protein Sequence:NP_035632.1Re-query CCDS DB by Nucleotide ID:NM_011502Re-query CCDS DB by Protein ID:NP_035632Link to BLAST:NP_035632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035632.1 269 Q64704-3 269 100% 0 0

Chromosomal Locations for CCDS 29612.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11777093 11777170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11782800 11782910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11785390 11785524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11785685 11785758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11786525 11786633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11788169 11788236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11789557 11789631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11790048 11790093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11803494 11803577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11818692 11818721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGAAGGACCGGCTGGAGCAGCTGAAGGCCAAGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGA
TTGCCATTGACAACACAGCCTTCATGGACGAGTTCTTCTCTGAGAACTTCCACGGAATCCTCTCCTATCT
CCTGAGATTGAGCTCACATGAAACCAAAGATGACCTTGAACAGCTCACAACTGAGATCAAGAAAAGGGCC
AACAACGTCCGGAACAAGCTGAAGAGCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAG
ACCTTCGGATACGAAAGTCCCAGCACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAA
TGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTACTGGCAAG
AAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGATCA
TTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGA
GAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAGGGAGCCATG
ATTGACCGCATTGAGAACAACATGGACCAGTCAGTGGGCTTTGTGGAACGGGCTGTGGCAGATACCAAAA
AGGCGGTCAAGTATCAGAGTGAAGCCCGGAGGAAGAAGATCATGATCATGATCTGCTGTATTATCCTTGC
CATCATCTTGGCTTCTACCATTGGGGGCATATTTGCCTGA

Translation (269 aa):
MKDRLEQLKAKQLTQDDDTDEVEIAIDNTAFMDEFFSENFHGILSYLLRLSSHETKDDLEQLTTEIKKRA
NNVRNKLKSMEKHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDFRERSKGRIQRQLEITGK
KTTDEELEEMLESGNPAIFTSGIIDSQISKQALSEIEGRHKDIVRLESSIKELHDMFMDIAMLVENQGAM
IDRIENNMDQSVGFVERAVADTKKAVKYQSEARRKKIMIMICCIILAIILASTIGGIFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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