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Report for CCDS29607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29607.1 Public Mus musculus 19 Oosp1 23 108 98 CCDS HistoryNCBI Gene:170834Re-query CCDS DB by CCDS ID:29607.1Re-query CCDS DB by GeneID:170834See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29607.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048214.8 ENSMUSP00000036529.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048214.8Link to Ensembl Protein Viewer:ENSMUSP00000036529.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000048214Re-query CCDS DB by Protein ID:ENSMUSP00000036529
Original member Current member NCBI NM_133353.3 NP_579931.1 Accepted alive Link to Nucleotide Sequence:NM_133353.3Link to Protein Sequence:NP_579931.1Re-query CCDS DB by Nucleotide ID:NM_133353Re-query CCDS DB by Protein ID:NP_579931Link to BLAST:NP_579931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_579931.1 202 Q925U0-1 202 100% 0 0

Chromosomal Locations for CCDS 29607.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11667690 11667822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11668297 11668416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11687335 11687432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11688667 11688848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11690942 11691017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGAAGCCTTTCGTGGGCCTGCTGGGACTCCTCCTGCTTCTTTCCTTTATGAAGACTTGTGCTGATGATT
GGACAGCCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAA
CATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGAT
ACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAAGTTCTTTGTGATGTCACTCTGC
TGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTAT
GCACAATCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGG
ACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAACCTTTCAACATCAA
GCGAAGATCACCATGTCTCCACGGAGCCTTGGGCCTCTGAAACGAGCAGGTCTGAGGCTGCTGAAGTACC
TAGCTTCATGGATCAAAACTTCTCGGTTTTCCATTTCTCCAGAATGTAG

Translation (202 aa):
MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPND
TYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGW
TEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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