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Report for CCDS29581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29581.1 Public Mus musculus 19 Tmem138 23 108 98 CCDS HistoryNCBI Gene:72982Re-query CCDS DB by CCDS ID:29581.1Re-query CCDS DB by GeneID:72982See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025568.2 ENSMUSP00000025568.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025568.2Link to Ensembl Protein Viewer:ENSMUSP00000025568.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025568Re-query CCDS DB by Protein ID:ENSMUSP00000025568
Original member Current member EBI ENSMUST00000236099.1 ENSMUSP00000157715.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236099.1Link to Ensembl Protein Viewer:ENSMUSP00000157715.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236099Re-query CCDS DB by Protein ID:ENSMUSP00000157715
Original member Current member NCBI NM_028411.4 NP_082687.1 Accepted alive Link to Nucleotide Sequence:NM_028411.4Link to Protein Sequence:NP_082687.1Re-query CCDS DB by Nucleotide ID:NM_028411Re-query CCDS DB by Protein ID:NP_082687Link to BLAST:NP_082687.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082687.1 162 Q9D6G5-1 162 100% 0 0

Chromosomal Locations for CCDS 29581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10571156 10571268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10571529 10571604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10574837 10575008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10575240 10575367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGCTCCAGACCGGTAACTACAGCCTGGTGCTCTCCCTGCAGTTCCTGTTGCTGTCCTATGACCTGTTCG
TCAACTCCTTCTCAGAGCTACTCCGAATGGCTCCTGTTATCCAGCTTGTGCTGTTCATCATCCAGGATAT
TGCAATCCTCTTCAACATCATCATAATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTG
GTCAACCTCCTTTTCCATAAGTTCAAAGGGACCATCATTCTGACATCTGTGTACCTTGCCCTCAGCATCT
CCCTACATGTCTGGGTCATGAACGTGCGATGGAAAAACTCCAGCAGCTTCAGCTGGACAAACGGCCTGCA
AACACTGTTTGTATTCCAGAGACTAGCCGCAGTGCTCTACTGCTATTTCTACAAAAGGACGGCCGTGAGA
CTGGGTGACCCCCGCTTTTACCAGGACTCACTGTGGCTTCGCAAGGAGTTCATGCAAGTCCGAAGGTGA

Translation (162 aa):
MLQTGNYSLVLSLQFLLLSYDLFVNSFSELLRMAPVIQLVLFIIQDIAILFNIIIIFLMFFNTFVFQAGL
VNLLFHKFKGTIILTSVYLALSISLHVWVMNVRWKNSSSFSWTNGLQTLFVFQRLAAVLYCYFYKRTAVR
LGDPRFYQDSLWLRKEFMQVRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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