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Report for CCDS29560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29560.1 Public Mus musculus 19 Eml3 23 108 98 CCDS HistoryNCBI Gene:225898Re-query CCDS DB by CCDS ID:29560.1Re-query CCDS DB by GeneID:225898See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29560.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096241.5 ENSMUSP00000093960.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096241.5Link to Ensembl Protein Viewer:ENSMUSP00000093960.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096241Re-query CCDS DB by Protein ID:ENSMUSP00000093960
Original member Current member NCBI NM_144872.1 NP_659121.1 Accepted alive Link to Nucleotide Sequence:NM_144872.1Link to Protein Sequence:NP_659121.1Re-query CCDS DB by Nucleotide ID:NM_144872Re-query CCDS DB by Protein ID:NP_659121Link to BLAST:NP_659121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659121.1 897 Q8VC03 897 100% 0 0

Chromosomal Locations for CCDS 29560.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8929931 8929952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8930799 8930970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8931044 8931304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8931390 8931503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8933242 8933309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8933423 8933546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8933770 8933940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8934087 8934156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8934242 8934352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8934951 8935046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8936304 8936459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8936619 8936760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8937129 8937280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8937362 8937487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8937563 8937694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8938462 8938529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8939028 8939116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8939188 8939285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8939417 8939504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8940579 8940677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8940903 8941033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8941130 8941333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2694 nt):
ATGGACGGGGCTGCGGGGCCCGGTGAGGGCCCTGCTCATGAGACCCTGCAGACCCTGAGCCAGCGACTTC
GGGTGCAGGAAGAAGAGATGGAACTGGTAAAAGCGGCTTTAGCAGAAGCCCTTCGCCTGCTGCGGCTGCA
TGGCTCCACCACAACCCTGCAGGGCTCTGGCATATCAGCCCCGACAAGGAACAGCAGCATCACAGTCCCT
CCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGA
TTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACC
TAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATC
CTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACACGCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCT
CAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAG
CACAGAGAGCCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTAT
AACTTAGAAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCA
TCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGTTTATGGGTA
CAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGT
GTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGG
GTCACACAGACTGCGTTCGATGCCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGC
TGGAGTGGACAAGGATGGAAAGCCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAA
CTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCGGATCAAG
GTGCTTTTCTGTGTGTGGTGGATGATTCCAATGAGCACATGCTGTCAGTGTGGGACTGTAGCCGGGGAGT
GAAGCTGGCTGAGATTAAGAGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGC
TGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGA
ATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGGAAATACAAGAAACCCAAGTTCATCCCTTGCTTTGT
CTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTC
TCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAGAGACCTACACGATCGTGGCCCAGGCCCATGCTC
ACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCG
ACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAGATTCCAGAACACTTTGGAGCT
GTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGG
GAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAGGGCCACACTGATGAGCTCTGGGGACTGTGTACACA
TCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCAT
GCACTGGCCTGGAGCATGGACCTAAAGGAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTG
TGGTTGTAGGACTGAACACAGGGAGGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGT
CACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGATGGGTTGTACCTGGCTATTGGTTCC
CATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTA
TGGGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGG
GGATTATGAGATTCTTTACTGGGATGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGCTATGAGAGCAGA
GACCGGGAGTGGGCTACCTATACCTGTGTGCTGGGCTTCCACGTCTATGGTGTGTGGCCTGATGGCTCTG
ATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTG
CAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAGGCGCCAAGTCGTATGTACTCAGGCCATGGC
AGCCATGTGACTAGTGTCCGGTTCACGCACGACGACTCATACCTTGTCTCCTTAGGTGGCAAGGATGCTA
GCATCTTTCAGTGGCGAGTGCTGGGGGCAGGGAGCTCTGGGCCCGCTCCTGCCACACCATCTAGAACGCC
CTCTCTGTCCCCTGCCTCCTCCCTGGACGTGTGA

Translation (897 aa):
MDGAAGPGEGPAHETLQTLSQRLRVQEEEMELVKAALAEALRLLRLHGSTTTLQGSGISAPTRNSSITVP
PGLPPTCSPSLVTRGTQTEEELEIVPSSGPPGLSNGPPALQGGSEEPSGTQSEGGCSSSSGAGSPGPPGI
LRPVQPLQRSDTPRRNSSSSSSPSERPRQKLSRKAASSANLLLRSGSTESRGNKDPLSSPGGPGSRRSNY
NLEGISVKMFLRGRPITMYIPSGIRSLEELPSGPPPETLSLDWVYGYRGRDSRSNLFVLRSGEVVYFIAC
VVVLYRPGGGPGGPGGGGQRHYRGHTDCVRCLAVHPDGVRVASGQTAGVDKDGKPLQPVVHIWDSETLLK
LQEIGLGAFERGVGALAFSAADQGAFLCVVDDSNEHMLSVWDCSRGVKLAEIKSTNDSVLAVGFSPRDSS
CIVTSGKSHVHFWNWSGGTGAPGNGLLARKQGVFGKYKKPKFIPCFVFLPDGDILTGDSEGNILTWGRSV
SDSKTPGRGGAKETYTIVAQAHAHEGSIFALCLRRDGTVLSGGGRDRRLVQWGPGLVALQEAEIPEHFGA
VRAIAEGLGSELLVGTTKNALLRGDLAQGFSPVIQGHTDELWGLCTHPSQNRFLTCGHDRQLCLWDGEGH
ALAWSMDLKETGLCADFHPSGAVVVVGLNTGRWLVLDTETREIVSDVTDGNEQLSVVRYSPDGLYLAIGS
HDNMIYIYSVSSCGTKSSRFGRCMGHSSFITHLDWSKDGNFIMSNSGDYEILYWDVAGGCKLLRNRYESR
DREWATYTCVLGFHVYGVWPDGSDGTDINSLCRSHNERVVAVADDFCKVHLFQYPCARAKAPSRMYSGHG
SHVTSVRFTHDDSYLVSLGGKDASIFQWRVLGAGSSGPAPATPSRTPSLSPASSLDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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