NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29535.1 Public Mus musculus 19 Slc22a29 23 108 98 CCDS HistoryNCBI Gene:236293Re-query CCDS DB by CCDS ID:29535.1Re-query CCDS DB by GeneID:236293See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113298.8 ENSMUSP00000108923.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113298.8Link to Ensembl Protein Viewer:ENSMUSP00000108923.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113298Re-query CCDS DB by Protein ID:ENSMUSP00000108923
Original member Current member NCBI NM_172776.3 NP_766364.1 Accepted alive Link to Nucleotide Sequence:NM_172776.3Link to Protein Sequence:NP_766364.1Re-query CCDS DB by Nucleotide ID:NM_172776Re-query CCDS DB by Protein ID:NP_766364Link to BLAST:NP_766364.1

Chromosomal Locations for CCDS 29535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8160554 8160614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8161502 8161705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8162649 8162757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8169155 8169369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8169930 8170045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8193401 8193521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8207006 8207174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8207264 8207418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8217764 8217867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8218272 8218673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGTCCTTTCAAGAACTCCTGAATCAAGTTGGAAGCCTAGGAAGATTCCAGATCCTTCAGATAGTTTTTC
TTTTCCTCCTCAATGCCATTGTAGTACCACATATTGGAATGGAGAACTTTACTGCAGCCATTCCCAATCA
TCGCTGCTGGGTCCCCATCCTTGACAATGACACTGCCTCTGATAATGGCAGTAGGATACTGAGCCAAGAT
GACCTCCTGAGGATCTCCATCCCCCTGGATTCCAACCTGAGACTGGATAAATGTCGTCGTTTTGCCCAAC
CACAGTGGCATCTTCTTCATTTGAATGGCACTTTCTCCAATGTGTCAGAGCCAGACACTGAGCCCTGTGT
GGATGGTTGGGTGTATGACAGGAGCAACTTCCTTTCTACCATTGTGACTGAGTGGGACTTGGTATGTGAA
TCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTG
GCCATCTGTCAGACAGGTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGA
AACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTG
GAACCCATATCAGTAAATAGTCACTTGCTCATGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGG
CAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAAT
CTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAGGTGGCTGTCA
GAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCAC
ACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAGATTGTGAGAACAAGTATGAAGGCAGAACT
TGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGT
GTCCTGTCCTTTATAAGACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGA
GTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTT
TGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATG
ATTGCTGTATTTGTACCTCAAGAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGGAGGAATTT
CTTCTCTATGTGTGGGTGTTAGTCATCTTCATACAAATGAGCTACTCCCAACCACACTAAGGGCAACAGC
TCTAGGAGTCATTGGATTCTTTGGTAATAGTGGATTATTCCTATCCCCCCTGTTTATGCTGGTAGCGACA
TACTATGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAATGCGTTTACTGTGTTTCTCC
TTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGATTGGAAAGAATCAAG
AAAAGGAAAGAGGGAGGATCCCATCATTAAAGTCACAAGGTTGTAA

Translation (551 aa):
MSFQELLNQVGSLGRFQILQIVFLFLLNAIVVPHIGMENFTAAIPNHRCWVPILDNDTASDNGSRILSQD
DLLRISIPLDSNLRLDKCRRFAQPQWHLLHLNGTFSNVSEPDTEPCVDGWVYDRSNFLSTIVTEWDLVCE
SQALNSVTKFSFMIGLFIGGIICGHLSDRFGRKFILTCALLQFAITETCVAFAPSFFIYCSLRFLAGMSV
EPISVNSHLLMLEWTSPKFLAMMAVLSSCAPNIGFMILAGLAFLFRIWHHLQLTMSAPIFFFLILTRWLS
ESARWLILINKPQKGLKELRKVAHMNGMKNSGDLTMEIVRTSMKAELEAAKTKPSLRDLFHTSILRKRIC
VLSFIRLFFTVSIIGLAVHLQHLSSNIILLQFLISALAILVSVIGPFVLNHIGRRITYLVLMSLRGIFIM
IAVFVPQEMQTLRIIMATLAGGISSLCVGVSHLHTNELLPTTLRATALGVIGFFGNSGLFLSPLFMLVAT
YYANLPWIFYGGFSIFNAFTVFLLPETKNQPLPDSTHDVGNDWKESRKGKREDPIIKVTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH