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Report for CCDS29525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29525.1 Public Mus musculus 19 Rtn3 23 108 98 CCDS HistoryNCBI Gene:20168Re-query CCDS DB by CCDS ID:29525.1Re-query CCDS DB by GeneID:20168See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29525.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088171.11 ENSMUSP00000085496.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088171.11Link to Ensembl Protein Viewer:ENSMUSP00000085496.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088171Re-query CCDS DB by Protein ID:ENSMUSP00000085496
Original member Current member NCBI NM_001003933.2 NP_001003933.1 Accepted alive Link to Nucleotide Sequence:NM_001003933.2Link to Protein Sequence:NP_001003933.1Re-query CCDS DB by Nucleotide ID:NM_001003933Re-query CCDS DB by Protein ID:NP_001003933Link to BLAST:NP_001003933.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003933.1 945 Q9ES97-2 945 100% 0 0

Chromosomal Locations for CCDS 29525.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7427830 7427875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7429751 7429809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7430986 7431032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7431966 7432035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7432452 7432590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7434931 7435138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7456300 7458423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7482939 7483083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2838 nt):
ATGGCGGAGTCGTCAGCGGCCACTCAGTCCCCGTCAGTCTCCTCGTCGTCCTCCGGGGCCGAGCCGTCAG
CTCTCGGCGGCGGCGGCGGGAGCCCTGGAGCCTGCCCCGCCCTGGGGGCGAAGAGCTGCGGCTCCTCGTG
TGCGGCGGGATTGAGCTCTCTTTGCTCTGATGAGCCACCTTCAAAAAGTATGACTTCCTCCTTTCTTTCA
TCTTCTGAAATACATAACCCTGACCCTACAACACCGCTTGGAGAAAAGAGTGAAACATTAGGTAGCCAGT
TTGTTCTAGCTAAAGGAAAAGACCCCTTGGTTCTTCTAGATAAGAAAAAACTGGACTCACCTCAGGGGAC
CAACAAGGACAGAGTAGACGCTCCGGTTTCTCTTGCAACTGGCATTCCTTGCAGCCACCCTTCTATTCCA
GACAGTTTCCCAGAGCAACCTGCTTTTCTGTCAAAAGAAATTGGTCCAGCAGAAGAGTGGGTAGTTAAAG
ACCAAGAACCCAAGAACCCAAACAAGGTTCCAGATGGGGAGGACAGAAGTGCACTGGATTTTGGGCAGTC
TAAGGCAGAACACATTTGTACATATTCCTTGTCCCCATCTGAACTTCCAGTAGCCAGTGTAGAAAAAGAT
TCTCCTGAGTCACCGTTTGAAGTAATTATTGACAAAGCAACATTTGACAGAGAATTTAAAGATTTGTATA
AGGAAAACCCAAATGATTTGGGTGGCTGGGCAGCTCATGGCGATAGAGAATCCCCCGCAGACTTGTTGGA
AATGAATGACAAACTCTTTCCACTGAGAAATAAAGAGGCAGGGCGTTACCCATCCTCTGTACTGCTCGGT
AGACAGTTCTCACACACTACAGCAGCACTGGAAGAGGTGTCTAGATGTGTGAATGATATGCATAACTTTA
CTAATGAAATACTGACTTGGGACTTAGATCCCCAAGCAAAACAACAGGCCAATAAAACATCTTGCACCAC
AGAAAGTACAGGACTAGACAGGAGTGAACTTCGCTCAGAAATTCCAGTTATAAATCTTAAAACAAACCCT
CAACAGAAAATGCCTGTATGTTCTTTTAATGGGAGCACTCCCATTACCAAATCCACAGGTGACTGGACAG
AAGCATTTACAGAAGGAAAACCTGTAAGAGACTACCTCAGTTCCACAAAAGAAGCTGGTGGCAACGGTGT
GCCAGGCAGTTCTCAGCTTCATTCTGAGCTGCCTGGCTCTATGCCTGAGAAATGGGTCTCAGGCTCTGGA
GCAGCCACAGTGGAAGTAACTTTACCTAACCTGAGGGGTGCCTGGCCTAACTCTGTGATGGGGGAAGTCA
CAGAGGTTGATAGTTCTGGGGAATCTGATGACACAGTAATAGAGGACATCACAGAAAAACCTGACTCCCT
TCCAAGTGCTGCTGCAAAAACAAGTGAAAGGGAAATCAAAGAGACTCCCAGTCGTGAAACTGTGAGGAGT
GAAATGTGTGAAAACTCTGAGCAGCCGCAGGCCCAGCCAGAAACTCCTACTCAGAAGAGTCTGGAAGGTG
AGGTGGCTTCACAAGTACCTAATACCCTGAATGAAGTCACACCTGAAAAGCTTGATATGACTAACAACCC
CAAAGTTTGCTCAGCAGCACCTCCAAGTGTTCTTAATGAGACAGGATTCTCACTAACTGTGCCAGCTTCT
GCCAAGTTGGAATCTTTGCTTGGAAAATATGTTGAAGATACAGATGGTTCCTCCCCAGAGGACTTGATGG
CTGTCCTCACAGGAGCCGAGGAGAAGGGGATAGTGGATAAAGAGGAAGGTGATGTTTTGGAAGCAGTGTT
AGAGAAGATAGCAGACTTTAAAAACACTTTGCCTGTGGAACTCTTGCATGAAAGTGAGCTAAGTGGTTCT
GAAACCAAAAATATTAAAAGCAAATACAGTGAAGACAGCAGAGAAACAACTGGAGGTGCCCCTACGATGT
CTCCCGACTTAGAGCAGGAGCAGCTCACCATCAGAGCCATTAAAGAATTAGGAGAAAGGCAAGCTGAGAA
GGTGCAGGATGAAGGAATATCTTCTGGAGGAAAACTCAAGCAAACCTTTGCTCCACAGTCTGGGCCACAG
AGTTCATCTGACATCCTAGAACACACAGATGTCAAAACTGGATCTGATCTTGGAATTCCCAAAAATCCTA
CTATCATCAAAAACACTAGAATAGATTCTATTTCCAGCCTTACCAAGACTGAAATGGTTAACAAGAATGT
TCTAGCAAGACTTCTCAGTGATTTCCCAGTGCACGATCTGATTTTCTGGCGAGATGTGAAGAAGACTGGG
TTTGTCTTTGGCACCACACTGATCATGCTGCTCTCTCTGGCAGCCTTCAGTGTTATCAGTGTGGTCTCTT
ACCTCATCCTGGCTCTTCTCTCTGTCACCATCAGCTTCAGAGTCTATAAGTCTGTCATTCAAGCTGTGCA
GAAGTCAGAAGAAGGACATCCATTCAAGGCCTACTTGGATGTGGACATTACCCTGTCTTCAGAAGCTTTC
CACAACTACATGAATGCTGCGATGGTGCATGTCAACAAGGCCCTCAAACTCATTATTCGTCTCTTTCTGG
TAGAAGACTTGGTTGACTCCTTGAAGCTGGCTGTCTTCATGTGGCTGATGACCTATGTTGGTGCTGTTTT
TAATGGAATTACCCTTCTGATTCTCGCCGAGCTGCTTGTCTTCAGCGTCCCAATTGTCTATGAGAAGTAT
AAGACACAGATTGACCACTATGTTGGGATTGCCCGGGATCAGACCAAGTCAATTGTTGAAAAGATCCAAG
CAAAGCTTCCTGGAATCGCCAAAAAAAAGGCAGAATAA

Translation (945 aa):
MAESSAATQSPSVSSSSSGAEPSALGGGGGSPGACPALGAKSCGSSCAAGLSSLCSDEPPSKSMTSSFLS
SSEIHNPDPTTPLGEKSETLGSQFVLAKGKDPLVLLDKKKLDSPQGTNKDRVDAPVSLATGIPCSHPSIP
DSFPEQPAFLSKEIGPAEEWVVKDQEPKNPNKVPDGEDRSALDFGQSKAEHICTYSLSPSELPVASVEKD
SPESPFEVIIDKATFDREFKDLYKENPNDLGGWAAHGDRESPADLLEMNDKLFPLRNKEAGRYPSSVLLG
RQFSHTTAALEEVSRCVNDMHNFTNEILTWDLDPQAKQQANKTSCTTESTGLDRSELRSEIPVINLKTNP
QQKMPVCSFNGSTPITKSTGDWTEAFTEGKPVRDYLSSTKEAGGNGVPGSSQLHSELPGSMPEKWVSGSG
AATVEVTLPNLRGAWPNSVMGEVTEVDSSGESDDTVIEDITEKPDSLPSAAAKTSEREIKETPSRETVRS
EMCENSEQPQAQPETPTQKSLEGEVASQVPNTLNEVTPEKLDMTNNPKVCSAAPPSVLNETGFSLTVPAS
AKLESLLGKYVEDTDGSSPEDLMAVLTGAEEKGIVDKEEGDVLEAVLEKIADFKNTLPVELLHESELSGS
ETKNIKSKYSEDSRETTGGAPTMSPDLEQEQLTIRAIKELGERQAEKVQDEGISSGGKLKQTFAPQSGPQ
SSSDILEHTDVKTGSDLGIPKNPTIIKNTRIDSISSLTKTEMVNKNVLARLLSDFPVHDLIFWRDVKKTG
FVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAF
HNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKY
KTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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