NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS294.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
294.2 Public Homo sapiens 1 TENT5B 24 110 108 CCDS HistoryNCBI Gene:115572Re-query CCDS DB by CCDS ID:294.2Re-query CCDS DB by GeneID:115572See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 294.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 294.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289166.6 ENSP00000289166.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289166.6Link to Ensembl Protein Viewer:ENSP00000289166.5Re-query CCDS DB by Nucleotide ID:ENST00000289166Re-query CCDS DB by Protein ID:ENSP00000289166
Original member Current member NCBI NM_052943.4 NP_443175.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052943.4Link to Protein Sequence:NP_443175.2Re-query CCDS DB by Nucleotide ID:NM_052943Re-query CCDS DB by Protein ID:NP_443175Link to BLAST:NP_443175.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443175.2 425 Q96A09 425 100% 0 0

Chromosomal Locations for CCDS 294.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 27005944 27006957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27012407 27012670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGATGCCGTCGGAGAGCGGAGCTGAGCGCAGGGACCGGGCGGCTGCTCAGGTGGGGACGGCTGCGGCCA
CGGCGGTGGCCACGGCAGCCCCGGCAGGCGGCGGCCCCGACCCGGAGGCCTTATCGGCCTTCCCCGGACG
GCACCTGAGTGGGCTGAGCTGGCCACAGGTGAAGCGACTGGACGCTCTTCTGAGCGAGCCGATTCCCATT
CACGGGCGCGGCAACTTCCCCACGCTGAGCGTGCAGCCCCGGCAGATCGTGCAGGTGGTCCGCAGCACCC
TGGAGGAGCAGGGACTACATGTGCACAGTGTGCGGCTGCATGGTTCAGCTGCCAGCCACGTGCTGCACCC
TGAGAGTGGCCTGGGCTACAAGGATCTGGACCTGGTGTTCCGGGTGGACCTGCGCAGTGAGGCATCCTTC
CAGCTGACCAAGGCAGTGGTGCTGGCCTGCCTACTAGACTTCCTGCCGGCCGGTGTGAGCCGGGCCAAGA
TCACGCCACTGACACTCAAGGAGGCATACGTGCAGAAGCTGGTGAAAGTGTGCACAGACTCGGACCGCTG
GAGCCTCATCTCACTGTCCAACAAGAGCGGCAAGAACGTGGAGCTCAAGTTTGTGGACTCGGTGAGACGC
CAGTTTGAATTCAGCATAGACTCCTTCCAGATCATCCTGGACTCCCTGTTGCTCTTTGGCCAGTGCTCGT
CCACTCCCATGTCTGAGGCCTTCCACCCAACGGTCACAGGCGAAAGCCTGTACGGGGACTTCACCGAGGC
CCTGGAGCACCTGCGGCACCGTGTCATCGCCACGCGCAGTCCCGAGGAGATCCGAGGTGGTGGCCTCCTC
AAGTACTGCCACCTCCTGGTGCGGGGCTTCCGGCCCCGGCCCAGCACCGATGTGCGCGCCCTGCAGCGCT
ACATGTGCTCCCGCTTCTTCATCGACTTTCCAGACCTGGTGGAGCAGCGGCGCACCCTAGAGCGCTACCT
GGAGGCCCACTTCGGTGGGGCAGATGCAGCCCGCCGTTACGCCTGCCTGGTGACACTGCACCGGGTGGTC
AACGAGAGCACCGTGTGCCTCATGAACCACGAGCGCCGCCAGACGCTGGACCTCATTGCCGCACTGGCGC
TGCAGGCACTGGCTGAGCAGGGCCCAGCTGCCACTGCCGCCCTGGCCTGGCGCCCTCCAGGCACTGACGG
GGTTGTGCCAGCCACTGTCAATTACTACGTGACCCCCGTGCAACCTCTCCTGGCTCACGCCTATCCCACC
TGGCTGCCTTGTAACTGA

Translation (425 aa):
MMPSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPI
HGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVDLRSEASF
QLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDSDRWSLISLSNKSGKNVELKFVDSVRR
QFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLL
KYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVV
NESTVCLMNHERRQTLDLIAALALQALAEQGPAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPT
WLPCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH