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Report for CCDS29252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29252.1 Public Mus musculus 18 Ppic 23 108 98 CCDS HistoryNCBI Gene:19038Re-query CCDS DB by CCDS ID:29252.1Re-query CCDS DB by GeneID:19038See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29252.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025419.8 ENSMUSP00000025419.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025419.8Link to Ensembl Protein Viewer:ENSMUSP00000025419.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025419Re-query CCDS DB by Protein ID:ENSMUSP00000025419
Original member Current member NCBI NM_008908.4 NP_032934.1 Accepted alive Link to Nucleotide Sequence:NM_008908.4Link to Protein Sequence:NP_032934.1Re-query CCDS DB by Nucleotide ID:NM_008908Re-query CCDS DB by Protein ID:NP_032934Link to BLAST:NP_032934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032934.1 212 P30412 212 100% 0 0

Chromosomal Locations for CCDS 29252.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 53406937 53407065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53409125 53409309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53410987 53411080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53411506 53411619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53417840 53417956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGAGCCCGGGTCCCCGTCTGCTGCTGCCCGCGGTGCTCTGCCTGGGGCTTGGAGCCCTGGTGTCTTCTT
CGGGGTCCTCAGGCGTCCGAAAACGAGGTCCCTCGGTGACGGACAAGGTCTTCTTTGATGTGAGGATCGG
AGACAAAGATGTGGGTAGAATTGTGATTGGCCTCTTTGGAAACGTTGTACCCAAGACGGTGGAAAACTTC
GTGGCTCTGGCAACAGGAGAGAAAGGCTACGGGTACAAGGGCAGCATCTTCCACCGTGTCATCAAGGACT
TCATGATTCAAGGAGGGGACTTCACAGCTAGAGATGGCACTGGAGGGATGAGCATCTATGGTGAGACATT
TCCGGATGAGAACTTCAAACTGAAGCACTATGGCATTGGCTGGGTCAGCATGGCCAATGCTGGACCAGAC
ACCAACGGATCCCAGTTCTTCATCACCTTGACCAAGCCCACCTGGTTGGATGGCAAACACGTTGTATTTG
GAAAAGTCCTAGATGGGATGACTGTGGTACATTCCATTGAACTTCAAGCAACAGATGGCCATGACCGCCC
ACTCACCGACTGCACCATCGTCAACAGTGGCAAGATAGATGTGAAAACACCCTTTGTGGTTGAGGTCCCT
GATTGGTGA

Translation (212 aa):
MSPGPRLLLPAVLCLGLGALVSSSGSSGVRKRGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENF
VALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPD
TNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVKTPFVVEVP
DW


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