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Report for CCDS29173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29173.1 Public Mus musculus 18 Pcdhb5 23 108 98 CCDS HistoryNCBI Gene:93876Re-query CCDS DB by CCDS ID:29173.1Re-query CCDS DB by GeneID:93876See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078271.3 ENSMUSP00000077389.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078271.3Link to Ensembl Protein Viewer:ENSMUSP00000077389.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000078271Re-query CCDS DB by Protein ID:ENSMUSP00000077389
Original member Current member NCBI NM_053130.3 NP_444360.1 Accepted alive Link to Nucleotide Sequence:NM_053130.3Link to Protein Sequence:NP_444360.1Re-query CCDS DB by Nucleotide ID:NM_053130Re-query CCDS DB by Protein ID:NP_444360Link to BLAST:NP_444360.1

Chromosomal Locations for CCDS 29173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37320569 37322947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2379 nt):
ATGGAGAAGCTGGAGAGAAATCATCGAAACAGGCAAGTGATTCCTTTCCTTTTTATGCTGCTTTGGGATC
AGGTCCTCATGGTGCCTACTCGGTACTCTGTCTTGGAGGAATCAGAAAGTGGCTCCTTTGTAGCCCATCT
GGCCAAGGATCTGGGTCTGGGAGCTGGGGAGCTGGCTGCCAGGTCTGCACGGGTGGTGTCTGACCATGAC
AAACAGCAATTCATTCTAGATTCTGAGACTGGAGATTTGCTTCTGAGGGAGAAACTAGACAGGGAAGAAC
TGTGTGGCTCTGTGGATCCCTGTGTGCTGCATTTCCAAGTGTTCCTAGAAAAGCCAGTGCAGTTTTTTCA
AGGAGAATTATTGATCCAGGATATAAATGACAACTCGCCAGAATTCCCAGATAAAGAATTGCTCTTGAAA
ATACTGGAAAACAGCCAGCCAGGCACACGGTTTTCATTAAAATTAGCCCAGGATTTGGATGTGGGCAGCA
ATGGGCTTCAACAATACACAGTCAACCCCAACTCTCATTTTCATGTCCTCACTCGAAATAATAGCGAGGG
CAAGAAATACCCAGAGTTGGTACAGGACAGAGCCCTGGACAGAGAGGAGCAGGCAGAGCTGAGCTTAATC
CTCACAGCTCTGGATGGCGGGTCTCCACCGAGGTCAGGAACAGCCCTGGTTCGAATCCTGATCATGGACA
TCAATGACAATGCTCCTGAGTTTGTGAACAACCCCTATGAGGTGCAGGTCCTAGAGAGCAGTCCCCCAGA
CTCCCCAGTCCTGACTGTCTTCGCACAGGATGCAGATGCTGGCAACTTTGGGAGAGTTTCCTATGGCTTG
TTCCAAGCATCAGATGAAATCCAGAAAACTTTCTCAATAAACGAATTCACTGGAGAAATACGACTGAAAA
CGAAATTGGATTTTGAAAAAACTAAATCTTACCATGTAGAAATTGAGGCCACAGATGGAGGAGGCCTTTC
TGGGAAGGGCTCTGTGGTGATAGAGGTGTTGGATGTGAACGACAATGCCCCAGAGCTGACCATATCTTCA
CTGACCAGCTCAGTCCCAGAAAATTCTCCAGAAACTGTGGTCGCTATCATCCGAATACGGGATAGAGATT
CTGGAGAGAATGGGAAGATGATTTGTTCAATTTCAGATCATGTGCCATTCATTTTAAAACCCTCTTACAA
GAACTTTTACACCCTGGTGACAGAGAGCCCTCTGGATAGAGAGAGCAGAGCTGAGTACAACATCACCATC
ACAGTCTCCGACCTGGGCACACCCAGGCTCACAACCCAGCACACCATAACAGTGAAGGTGTCCGACATTA
ACGACAACGCCCCTGCCTTCAGCCAAACCTCCTACACCATGTTTGTCCGCGAGAACAACAGCCCTGCCCT
GCACATTGGCACCATCAGTGCCACAGACTCAGACTCAGGCTCCAATGCTCACATCACCTACTCGCTGCTG
CCACCCCACGACCAACAGCTGGCCCTCCACTCGCTCATCTCCATCAATGCTGACAATGGGCAGCTATTTG
CGCTCAGTGCGCTGGACTATGAGGCCCTGCAGGGCTTCGAATTCTACGTGGGTGCCACAGACCGAGGCTC
TCCTGAGCTCAGCAGCCAGGCTCTGGTGCGCGTGGTGGTGCTAGACGACAATGACAATGCGCCCTTCGTG
CTCTACCCACTGCAGAATGCTTCTGCGCCCTGCACTGAGGTGCTGCCCAGGGCTGCGGAGCCTGGATACC
TGGTCACCAAGGTGGTGGCTGTGGACCGCGACTCTGGCCAGAATGCCTGGTTGTCATTCCAGCTGCTCAA
GGCCACGGAGCCCGGACTGTTCAGCGTGTGGGCTCACAATGGCGAGGTGCGCACCACCAGGCTGCTGAGT
GAGCGAGATGCACCCAAGCACAGGCTGCTGCTGCTGGTCAAGGACAATGGAGAGCCTCAGCGCTCTGCCA
GCGTCACGCTGCACGTGTTGCTGGTGGATGGCTTCTCTCAACCTTACCTGCCCCTGCCTGAAGTGGCGCG
CGACCCCGCACAGGATGATCCGGATGTGCTCACGCTCTACCTTGTCATTGCCTTGGCCTCTGTGTCTTCT
CTCTTTCTTTTGTCTGTGCTGATGTTCGTGGGAGTGAGGCTGTGCAGGAGGGCCAGGGAACCCTCTCTGG
GTGGCTGCTCTGTGCCTGAGGGCCACTTTCCTGGCCACCTGGTGGATGTGAGCCATGCAGGGACCCTGTC
CCAGAGCTACCAGTATGACATGTGTCTAACAGGAGAATCTGGGACTGGTGAGTTCAAATTCCTCAAGCCC
ATAGTCCCCAACCTAATGGTTCAGGATACGGGAAATCTTCACTGCAGGGATAGCTTTGTATTCAGCTAA

Translation (792 aa):
MEKLERNHRNRQVIPFLFMLLWDQVLMVPTRYSVLEESESGSFVAHLAKDLGLGAGELAARSARVVSDHD
KQQFILDSETGDLLLREKLDREELCGSVDPCVLHFQVFLEKPVQFFQGELLIQDINDNSPEFPDKELLLK
ILENSQPGTRFSLKLAQDLDVGSNGLQQYTVNPNSHFHVLTRNNSEGKKYPELVQDRALDREEQAELSLI
LTALDGGSPPRSGTALVRILIMDINDNAPEFVNNPYEVQVLESSPPDSPVLTVFAQDADAGNFGRVSYGL
FQASDEIQKTFSINEFTGEIRLKTKLDFEKTKSYHVEIEATDGGGLSGKGSVVIEVLDVNDNAPELTISS
LTSSVPENSPETVVAIIRIRDRDSGENGKMICSISDHVPFILKPSYKNFYTLVTESPLDRESRAEYNITI
TVSDLGTPRLTTQHTITVKVSDINDNAPAFSQTSYTMFVRENNSPALHIGTISATDSDSGSNAHITYSLL
PPHDQQLALHSLISINADNGQLFALSALDYEALQGFEFYVGATDRGSPELSSQALVRVVVLDDNDNAPFV
LYPLQNASAPCTEVLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLS
ERDAPKHRLLLLVKDNGEPQRSASVTLHVLLVDGFSQPYLPLPEVARDPAQDDPDVLTLYLVIALASVSS
LFLLSVLMFVGVRLCRRAREPSLGGCSVPEGHFPGHLVDVSHAGTLSQSYQYDMCLTGESGTGEFKFLKP
IVPNLMVQDTGNLHCRDSFVFS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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