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Report for CCDS2917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2917.1 Public Homo sapiens 3 PPP4R2 24 110 108 CCDS HistoryNCBI Gene:151987Re-query CCDS DB by CCDS ID:2917.1Re-query CCDS DB by GeneID:151987See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2917.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356692.10 ENSP00000349124.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356692.10Link to Ensembl Protein Viewer:ENSP00000349124.5Re-query CCDS DB by Nucleotide ID:ENST00000356692Re-query CCDS DB by Protein ID:ENSP00000349124
Original member Current member NCBI NM_174907.4 NP_777567.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174907.4Link to Protein Sequence:NP_777567.1Re-query CCDS DB by Nucleotide ID:NM_174907Re-query CCDS DB by Protein ID:NP_777567Link to BLAST:NP_777567.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777567.1 417 Q9NY27-1 417 100% 0 0

Chromosomal Locations for CCDS 2917.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 72997038 72997071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 72998077 72998158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73047186 73047356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73059037 73059130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73061023 73061060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73063673 73063747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73064003 73064146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73064852 73065141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73065397 73065722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGACGTCGAGAGGCTCCAGGAGGCGCTGAAAGATTTTGAGAAGAGGGGGAAAAAGGAAGTTTGTCCTG
TCCTGGATCAGTTTCTTTGTCATGTAGCCAAGACTGGAGAAACAATGATTCAGTGGTCCCAATTTAAAGG
CTATTTTATTTTCAAACTGGAGAAAGTGATGGATGATTTCAGAACTTCAGCTCCTGAGCCAAGAGGTCCT
CCCAACCCTAATGTCGAATATATTCCCTTTGATGAAATGAAGGAAAGAATACTGAAAATTGTCACTGGAT
TTAATGGTATCCCTTTTACTATTCAGCGACTATGTGAATTGTTAACAGATCCAAGGAGAAACTATACAGG
AACAGACAAATTTCTCAGAGGAGTAGAAAAGAATGTGATGGTTGTTAGCTGTGTTTATCCTTCTTCAGAG
AAAAACAATTCCAATAGTTTAAATCGAATGAATGGTGTTATGTTTCCTGGAAATTCACCAAGCTATACTG
AGAGGTCTAATATAAATGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTTTCTTTGTCAGCCCC
CATGACAACAAATGGGTTGCCTGAGAGCACAGACAGCAAAGAGGCAAATTTGCAGCAAAATGAGGAGAAA
AATCACAGTGACTCTTCGACCTCTGAATCAGAAGTTTCCTCAGTGAGCCCTTTGAAAAATAAACATCCAG
ATGAAGATGCTGTGGAAGCTGAGGGGCATGAGGTAAAAAGACTCAGGTTTGACAAAGAAGGTGAAGTCAG
AGAAACAGCCAGTCAAACGACTTCCAGCGAAATTTCTTCAGTTATGGTAGGAGAAACAGAAGCATCATCT
TCATCTCAGGATAAAGACAAAGATAGCCGTTGTACCCGGCAGCACTGTACAGAAGAGGATGAAGAAGAGG
ATGAAGAGGAAGAAGAAGAGTCTTTTATGACATCAAGAGAAATGATCCCAGAAAGAAAAAATCAAGAAAA
AGAATCTGATGATGCCTTAACTGTGAATGAAGAGACTTCTGAGGAAAATAATCAAATGGAGGAATCTGAT
GTGTCTCAAGCTGAGAAAGATTTGCTACATTCTGAAGGTAGTGAAAACGAAGGCCCTGTAAGTAGTAGTT
CTTCTGACTGCCGTGAAACAGAAGAATTAGTAGGATCCAATTCCAGTAAAACTGGAGAGATTCTTTCAGA
ATCATCCATGGAAAATGATGACGAAGCCACAGAAGTCACCGATGAACCAATGGAACAAGACTAA

Translation (417 aa):
MDVERLQEALKDFEKRGKKEVCPVLDQFLCHVAKTGETMIQWSQFKGYFIFKLEKVMDDFRTSAPEPRGP
PNPNVEYIPFDEMKERILKIVTGFNGIPFTIQRLCELLTDPRRNYTGTDKFLRGVEKNVMVVSCVYPSSE
KNNSNSLNRMNGVMFPGNSPSYTERSNINGPGTPRPLNRPKVSLSAPMTTNGLPESTDSKEANLQQNEEK
NHSDSSTSESEVSSVSPLKNKHPDEDAVEAEGHEVKRLRFDKEGEVRETASQTTSSEISSVMVGETEASS
SSQDKDKDSRCTRQHCTEEDEEEDEEEEEESFMTSREMIPERKNQEKESDDALTVNEETSEENNQMEESD
VSQAEKDLLHSEGSENEGPVSSSSSDCRETEELVGSNSSKTGEILSESSMENDDEATEVTDEPMEQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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