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Report for CCDS29159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29159.1 Public Mus musculus 18 Cd14 23 108 98 CCDS HistoryNCBI Gene:12475Re-query CCDS DB by CCDS ID:29159.1Re-query CCDS DB by GeneID:12475See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29159.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061829.7 ENSMUSP00000056669.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061829.7Link to Ensembl Protein Viewer:ENSMUSP00000056669.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061829Re-query CCDS DB by Protein ID:ENSMUSP00000056669
Original member Current member NCBI NM_009841.4 NP_033971.1 Accepted alive Link to Nucleotide Sequence:NM_009841.4Link to Protein Sequence:NP_033971.1Re-query CCDS DB by Nucleotide ID:NM_009841Re-query CCDS DB by Protein ID:NP_033971Link to BLAST:NP_033971.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033971.1 366 P10810 366 100% 0 0

Chromosomal Locations for CCDS 29159.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36725300 36726397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36726489 36726491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGAGCGTGTGCTTGGCTTGTTGCTGTTGCTTCTGGTGCACGCCTCTCCCGCCCCACCAGAGCCCTGCG
AGCTAGACGAGGAAAGTTGTTCCTGCAACTTCTCAGATCCGAAGCCAGATTGGTCCAGCGCTTTCAATTG
TTTGGGGGCGGCAGATGTGGAATTGTACGGCGGCGGCCGCAGCCTGGAATACCTTCTAAAGCGTGTGGAC
ACGGAAGCAGATCTGGGGCAGTTCACTGATATTATCAAGTCTCTGTCCTTAAAGCGGCTTACGGTGCGGG
CCGCGCGGATTCCTAGTCGGATTCTATTCGGAGCCCTGCGTGTGCTCGGGATTTCCGGCCTCCAGGAACT
GACTCTTGAAAATCTCGAGGTAACCGGCACCGCGCCGCCACCGCTTCTGGAAGCCACCGGACCCGATCTC
AACATCTTGAACCTCCGCAACGTGTCGTGGGCAACAAGGGATGCCTGGCTCGCAGAACTGCAGCAGTGGC
TAAAGCCTGGACTCAAGGTACTGAGTATTGCCCAAGCACACTCGCTCAACTTTTCCTGCGAACAGGTCCG
CGTCTTCCCTGCCCTCTCCACCTTAGACCTGTCTGACAATCCTGAATTGGGCGAGAGAGGACTGATCTCA
GCCCTCTGTCCCCTCAAGTTCCCGACCCTCCAAGTTTTAGCGCTGCGTAACGCGGGGATGGAGACGCCCA
GCGGCGTGTGCTCTGCGCTGGCCGCAGCAAGGGTACAGCTGCAAGGACTAGACCTTAGTCACAATTCACT
GCGGGATGCTGCAGGCGCTCCGAGTTGTGACTGGCCCAGTCAGCTAAACTCGCTCAATCTGTCTTTCACT
GGGCTGAAGCAGGTACCTAAAGGGCTGCCAGCCAAGCTCAGCGTGCTGGATCTCAGTTACAACAGGCTGG
ATAGGAACCCTAGCCCAGATGAGCTGCCCCAAGTGGGGAACCTGTCACTTAAAGGAAATCCCTTTTTGGA
CTCTGAATCCCACTCGGAGAAGTTTAACTCTGGCGTAGTCACCGCCGGAGCTCCATCATCCCAAGCAGTG
GCCTTGTCAGGAACTCTGGCTTTGCTCCTAGGAGATCGCCTCTTTGTTTAA

Translation (366 aa):
MERVLGLLLLLLVHASPAPPEPCELDEESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVD
TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL
NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS
ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT
GLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDSESHSEKFNSGVVTAGAPSSQAV
ALSGTLALLLGDRLFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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