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Report for CCDS29090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29090.1 Public Mus musculus 18 Rnf138 23 108 98 CCDS HistoryNCBI Gene:56515Re-query CCDS DB by CCDS ID:29090.1Re-query CCDS DB by GeneID:56515See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29090.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234536.1 ENSMUSP00000157047.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234536.1Link to Ensembl Protein Viewer:ENSMUSP00000157047.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234536Re-query CCDS DB by Protein ID:ENSMUSP00000157047
Original member Current member EBI ENSMUST00000234107.1 ENSMUSP00000157102.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234107.1Link to Ensembl Protein Viewer:ENSMUSP00000157102.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234107Re-query CCDS DB by Protein ID:ENSMUSP00000157102
Original member Current member NCBI NM_207623.2 NP_997506.1 Accepted alive Link to Nucleotide Sequence:NM_207623.2Link to Protein Sequence:NP_997506.1Re-query CCDS DB by Nucleotide ID:NM_207623Re-query CCDS DB by Protein ID:NP_997506Link to BLAST:NP_997506.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997506.1 245 Q9CQE0-1 245 100% 0 0

Chromosomal Locations for CCDS 29090.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 21002060 21002169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21008725 21008890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21010677 21010792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21017819 21017875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21020888 21020999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21024409 21024516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21026086 21026154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGTCCGAGGAACTTTCGGCGGCCACGTCCTACACGGAAGATGATTTCTACTGCCCTGTCTGTCAGGAGG
TGCTCAAGACGCCGGTGCGGACCGCGGCCTGTCAGCACGTTTTCTGTAGAAAATGTTTCCTGACTGCAAT
GAGAGAAAGTGGAATACATTGTCCCCTATGTCGTGGAAGTGTGACTAGAAGAGAAAGAGCATGTCCGGAA
CGGGCCTTAGATCTTGAAAATATCATGAGGAGGTTTTCTGGTAGCTGCAGATGCTGTTCAAAAAAGATTA
AATTCTATCGCATGAGACATCATTACAAATCTTGTAAGAAGTATCAGGATGAATATGGTGTTTCTTCTGT
CATTCCAAACTTTAAGATTTCTCAAGATTCAGTAAGGAGCAGTAATAGGAGTGAAACATCTGCATCTGAT
AACACAGAAACTTATCAAGAGGATACAAGTTCTTCTGGGCATCCTACCTTTAAGTGTCCCTTATGTCAAG
AGTCAAATTTCACCAGACAACGTTTATTGGATCACTGTAATAGTAACCACCTATTTCAGATAGTTCCTGT
GACATGTCCTATTTGTGTGTCTCTTCCTTGGGGAGATCCTAGCCAGATTACTAGAAATTTCGTTAGTCAT
CTAAATCAAAGACATCAGTTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAGGAAACCCAATATC
AAACTGCTGTGGAAGAGTCTTTTCAAGTAAACATGTGA

Translation (245 aa):
MSEELSAATSYTEDDFYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGSVTRRERACPE
RALDLENIMRRFSGSCRCCSKKIKFYRMRHHYKSCKKYQDEYGVSSVIPNFKISQDSVRSSNRSETSASD
NTETYQEDTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQITRNFVSH
LNQRHQFDYGEFVNLQLDEETQYQTAVEESFQVNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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