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Report for CCDS28956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28956.1 Public Mus musculus 17 Lpin2 23 108 98 CCDS HistoryNCBI Gene:64898Re-query CCDS DB by CCDS ID:28956.1Re-query CCDS DB by GeneID:64898See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28956.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000129635.7 ENSMUSP00000119282.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129635.7Link to Ensembl Protein Viewer:ENSMUSP00000119282.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129635Re-query CCDS DB by Protein ID:ENSMUSP00000119282
Original member Current member NCBI NM_001357791.1 NP_001344720.1 Accepted alive Link to Nucleotide Sequence:NM_001357791.1Link to Protein Sequence:NP_001344720.1Re-query CCDS DB by Nucleotide ID:NM_001357791Re-query CCDS DB by Protein ID:NP_001344720Link to BLAST:NP_001344720.1
Original member Current member NCBI NM_022882.4 NP_075020.2 Accepted alive Link to Nucleotide Sequence:NM_022882.4Link to Protein Sequence:NP_075020.2Re-query CCDS DB by Nucleotide ID:NM_022882Re-query CCDS DB by Protein ID:NP_075020Link to BLAST:NP_075020.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344720.1 893 Q99PI5-1 893 100% 0 0
NP_075020.2 893 Q99PI5-1 893 100% 0 0

Chromosomal Locations for CCDS 28956.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 71214973 71215164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71222055 71222150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71224940 71225241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71229308 71229415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71230272 71230395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71231183 71231519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71233828 71233927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71237386 71237573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71238608 71238701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71239084 71239153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71240812 71240901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71241644 71241726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71242626 71242770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71243288 71243436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71243925 71244011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71244772 71244924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71245119 71245233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71246416 71246519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71246827 71246971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2682 nt):
ATGAATTATGTGGGCCAGCTGGCTGGGCAGGTGCTCGTCACTGTGAAGGAACTCTACAAGGGCATTAACC
AAGCCACGTTGTCTGGATGCATCGATGTGGTCGTGGTGAGGCAGCAGGATGGCTCCTACCAGTGCTCGCC
TTTTCACGTACGCTTCGGGAAGCTGGGTGTCCTGAGGTCCAAGGAGAAAGTGATTGACATAGAAATCAAT
GGCAGTGCTGTGGATCTTCACATGAAATTGGGTGATAATGGGGAAGCCTTCTTTGTAGAGGAGACTGAAG
AAGAATATGAAAAATTACCTGCTTATCTTGCCACCTCACCAATTCCCACTGAAGACCAGTTCTTTAAACA
TATTGAAACCCCTTTGGTGAAATCAAGTGGAAATGAAAGGCCAGCTCAGAGTTCAGACGTTTCTCACACC
TTGGAATCAGAGGCAGTTTTCACTCAGAGTTCTGTGAAAAAGAAGAAACGAAGGAGAAAGAAGTGCAAAC
AGGACAATAGGAAGGAGGAGCAGGCAGCTTCCCCTGTTGCAGAAGATGTAGGTGATGTGGGTGTGAGCTC
AGATGATGAGAAGAGAGCCCAGGCAGCAAGAGGATCTTCAAATGCTTCCTTAAAGGAAGAGGACTACAAG
GAGCCTTCACTCTTCCATTCTGGGGATAACTACCCCTTATCTGATGGAGATTGGTCCCCATTAGAAACCA
CCTACCCTCAGGCTGTGTGCCCCAAGAGTGACTCTGAGCTGGAGGTGAAGCCATCTGAGAGCCTCCTCAG
ATCTGAGCCGCACATGGAGTGGACGTGGGGCGGGTTCCCAGAGTCCACCAAGGTCACCAAAAGAGAACGG
TATGACTATCATCCAAGGACAGCTACGATTACACCATCAGAGAACACACATTTCAGGGTAATTCCCAGTG
AAGACAGCCTCATAAGAGAAGTTGAAAAGGATGCTACTGTTGAAGATACTACCTGTACCATAGTGAAACC
CAAACCTAGAGCCCTGTGTAAGCAACTGAGTGATGCAGCGTCTACTGAGCTTCCCGAATCACCTCTTGAA
GCACCTCAGATTTCATCGTTATTAGATGCAGACCCTGTTCCCAGCCCATCAGCAGAGGCTCCCTCAGAAC
CCAAACCAGCTGCTAAAGACTCACCAACAAAAAAGAAAGGTGTTCACAAAAGAAGCCAGCACCAGGGACC
TGATGACATTTACCTTGATGACTTAAAGGCTCTTGAGCCTGAAGTGGCGGCTCTCTATTTCCCTAAAAGT
GACACGGATCCAGGTTCCAGGCAGTGGCCTGAGTCTGACACATTCTCTGGTTCTCAGTCCCCACAGTCTG
TGGGGAGTGCAGCTGCGGACAGTGGCACTGAATGCCTCTCAGACTCTGCCATGGACTTGCCTGATGTAAC
CCTCTCCCTCTGTGGAGGCCTCAGTGAGAATGGAGAGATTTCTAAAGAGAAGTTCATGGAGCATATCATC
ACTTACCATGAGTTTGCAGAAAACCCTGGCCTTATCGACAACCCAAACCTCGTGATCCGGATATATAACC
GTTACTACAACTGGGCGTTGGCTGCTCCCATGATCCTTAGCTTACAGGTATTTCAGAAGAGTTTGCCTAA
GGCCACCGTTGAGTCCTGGGTTAAAGACAAGATGCCAAAGAAATCTGGTCGATGGTGGTTTTGGCGGAAA
AAAGAAAGTATGATCAAACAGTTGCCAGAGACCAAGGAGGGAAAATCTGAGGTCCCTCCAGCAAATGACC
TGCCTTCCAATGCTGAGGAGCCAACCAGTGCCAGACCTGCAGAGAATGACACTTCTAGTGACGAGGGGTC
ACAGGAGTTGGAAGAAAGCATCAAAGTTGACCCCATCACCGTAGAGACACTGAGTCACTGTGGGACGGCC
TCATATAAGAAGTCTCTCCGACTCTCCTCGGACCAGATAGCAAAACTGAAGCTCCATGATGGCCCCAATG
ACGTGGTATTCAGTATCACAACCCAGTATCAGGGCACCTGTCGGTGTGCAGGGACCATCTACCTGTGGAA
CTGGAATGACAAAGTCATCATCTCTGACATCGACGGAACAATAACCAAGTCTGATGCTTTGGGGCAGATT
CTCCCACAGCTGGGTAAAGACTGGACGCATCAGGGCATAGCTAGGCTCTACCATTCCATCAATGAGAATG
GCTACAAGTTTCTGTACTGTTCTGCACGTGCCATCGGCATGGCCGACATGACCCGTGGTTATCTGCACTG
GGTCAATGATAAGGGGACGATCTTGCCTCGAGGCCCTCTGATGCTGTCTCCCAGCAGCTTGTTCTCTGCC
TTCCACAGGGAAGTGATAGAAAAGAAACCAGAGAAGTTCAAAATTGAGTGTCTGAATGATATTAAGAACT
TGTTTGCCCCGTCCAGGCAGCCCTTCTATGCTGCCTTTGGAAACCGTCCCAACGATGTCTATGCTTACAC
ACAAGTCGGAGTTCCAGACTGTAGGATATTTACTGTGAATCCAAAGGGTGAATTAATCCAAGAGAGGACC
AAAGGGAACAAATCATCGTATCACAGGCTGAGTGAGCTTGTGGAACACGTGTTCCCACTTCTCAGTAAGG
AGCAGAATTCTGCCTTTCCATGCCCAGAGTTCAGCTCCTTCTGCTACTGGCGAGACCCAATCCCTGACCT
GGACCTGGATGACCTGGCTTGA

Translation (893 aa):
MNYVGQLAGQVLVTVKELYKGINQATLSGCIDVVVVRQQDGSYQCSPFHVRFGKLGVLRSKEKVIDIEIN
GSAVDLHMKLGDNGEAFFVEETEEEYEKLPAYLATSPIPTEDQFFKHIETPLVKSSGNERPAQSSDVSHT
LESEAVFTQSSVKKKKRRRKKCKQDNRKEEQAASPVAEDVGDVGVSSDDEKRAQAARGSSNASLKEEDYK
EPSLFHSGDNYPLSDGDWSPLETTYPQAVCPKSDSELEVKPSESLLRSEPHMEWTWGGFPESTKVTKRER
YDYHPRTATITPSENTHFRVIPSEDSLIREVEKDATVEDTTCTIVKPKPRALCKQLSDAASTELPESPLE
APQISSLLDADPVPSPSAEAPSEPKPAAKDSPTKKKGVHKRSQHQGPDDIYLDDLKALEPEVAALYFPKS
DTDPGSRQWPESDTFSGSQSPQSVGSAAADSGTECLSDSAMDLPDVTLSLCGGLSENGEISKEKFMEHII
TYHEFAENPGLIDNPNLVIRIYNRYYNWALAAPMILSLQVFQKSLPKATVESWVKDKMPKKSGRWWFWRK
KESMIKQLPETKEGKSEVPPANDLPSNAEEPTSARPAENDTSSDEGSQELEESIKVDPITVETLSHCGTA
SYKKSLRLSSDQIAKLKLHDGPNDVVFSITTQYQGTCRCAGTIYLWNWNDKVIISDIDGTITKSDALGQI
LPQLGKDWTHQGIARLYHSINENGYKFLYCSARAIGMADMTRGYLHWVNDKGTILPRGPLMLSPSSLFSA
FHREVIEKKPEKFKIECLNDIKNLFAPSRQPFYAAFGNRPNDVYAYTQVGVPDCRIFTVNPKGELIQERT
KGNKSSYHRLSELVEHVFPLLSKEQNSAFPCPEFSSFCYWRDPIPDLDLDDLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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