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Report for CCDS28954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28954.1 Public Mus musculus 17 Myl12b 23 108 98 CCDS HistoryNCBI Gene:67938Re-query CCDS DB by CCDS ID:28954.1Re-query CCDS DB by GeneID:67938See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28954.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038446.9 ENSMUSP00000042364.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038446.9Link to Ensembl Protein Viewer:ENSMUSP00000042364.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038446Re-query CCDS DB by Protein ID:ENSMUSP00000042364
Original member Current member EBI ENSMUST00000233004.1 ENSMUSP00000156763.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233004.1Link to Ensembl Protein Viewer:ENSMUSP00000156763.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233004Re-query CCDS DB by Protein ID:ENSMUSP00000156763
Original member Current member EBI ENSMUST00000233357.1 ENSMUSP00000156883.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233357.1Link to Ensembl Protein Viewer:ENSMUSP00000156883.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233357Re-query CCDS DB by Protein ID:ENSMUSP00000156883
Original member Current member NCBI NM_023402.2 NP_075891.1 Accepted alive Link to Nucleotide Sequence:NM_023402.2Link to Protein Sequence:NP_075891.1Re-query CCDS DB by Nucleotide ID:NM_023402Re-query CCDS DB by Protein ID:NP_075891Link to BLAST:NP_075891.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075891.1 172 Q3THE2 172 100% 0 0

Chromosomal Locations for CCDS 28954.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 70974324 70974496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70975459 70975620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70977048 70977231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGTCGAGCAAAAAAGCGAAGACCAAGACCACCAAGAAGCGCCCTCAGCGCGCAACCTCCAATGTGTTCG
CCATGTTTGACCAGTCCCAGATCCAGGAGTTCAAAGAGGCCTTTAACATGATTGACCAGAACCGGGATGG
CTTCATTGACAAGGAGGACCTGCACGACATGCTGGCGTCTCTGGGGAAGAATCCCACTGATGCCTACCTG
GACGCCATGATGAACGAGGCCCCGGGCCCCATCAATTTCACCATGTTCCTCACCATGTTTGGGGAGAAGC
TAAACGGCACTGACCCCGAGGACGTCATCAGAAACGCCTTCGCTTGCTTTGATGAGGAAGCCACAGGCAC
CATCCAGGAGGATTACCTGAGGGAGCTGCTGACCACCATGGGCGACCGCTTCACAGACGAGGAAGTGGAT
GAGCTGTACAGAGAGGCCCCCATTGACAAAAAGGGGAACTTCAACTACATTGAGTTCACACGCATCCTGA
AGCACGGCGCGAAAGACAAAGATGACTGA

Translation (172 aa):
MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYL
DAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVD
ELYREAPIDKKGNFNYIEFTRILKHGAKDKDD


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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