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Report for CCDS2892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2892.1 Public Homo sapiens 3 FAM107A 24 110 108 CCDS HistoryNCBI Gene:11170Re-query CCDS DB by CCDS ID:2892.1Re-query CCDS DB by GeneID:11170See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360997.7 ENSP00000354270.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360997.7Link to Ensembl Protein Viewer:ENSP00000354270.2Re-query CCDS DB by Nucleotide ID:ENST00000360997Re-query CCDS DB by Protein ID:ENSP00000354270
Original member Current member EBI ENST00000394481.5 ENSP00000377991.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394481.5Link to Ensembl Protein Viewer:ENSP00000377991.1Re-query CCDS DB by Nucleotide ID:ENST00000394481Re-query CCDS DB by Protein ID:ENSP00000377991
Original member Current member EBI ENST00000649301.1 ENSP00000497152.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649301.1Link to Ensembl Protein Viewer:ENSP00000497152.1Re-query CCDS DB by Nucleotide ID:ENST00000649301Re-query CCDS DB by Protein ID:ENSP00000497152
Original member Current member NCBI NM_001076778.3 NP_001070246.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001076778.3Link to Protein Sequence:NP_001070246.1Re-query CCDS DB by Nucleotide ID:NM_001076778Re-query CCDS DB by Protein ID:NP_001070246Link to BLAST:NP_001070246.1
Original member Current member NCBI NM_007177.4 NP_009108.1 Accepted alive Link to Nucleotide Sequence:NM_007177.4Link to Protein Sequence:NP_009108.1Re-query CCDS DB by Nucleotide ID:NM_007177Re-query CCDS DB by Protein ID:NP_009108Link to BLAST:NP_009108.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070246.1 144 O95990-1 144 100% 0 0
NP_009108.1 144 O95990-1 144 100% 0 0

Chromosomal Locations for CCDS 2892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 58566588 58566695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58567208 58567364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58569691 58569860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGTACTCGGAGATCCAGAGGGAGCGGGCAGACATTGGGGGCCTGATGGCCCGGCCAGAATACAGAGAGT
GGAATCCGGAGCTCATCAAGCCCAAGAAGCTGCTGAACCCCGTGAAGGCCTCTCGGAGTCACCAGGAGCT
CCACCGGGAGCTGCTCATGAACCACAGAAGGGGCCTTGGTGTGGACAGCAAGCCAGAGCTGCAGCGTGTC
CTAGAGCACCGCCGGCGGAACCAGCTCATCAAGAAGAAGAAGGAGGAGCTGGAAGCCAAGCGGCTGCAGT
GCCCCTTTGAGCAGGAGCTGCTGAGACGGCAGCAGAGGCTGAACCAGCTGGAAAAACCACCAGAGAAGGA
AGAGGATCACGCCCCCGAGTTTATTAAAGTCAGGGAAAACCTGCGGAGAATTGCCACACTGACCAGCGAA
GAGAGAGAGCTGTAG

Translation (144 aa):
MYSEIQRERADIGGLMARPEYREWNPELIKPKKLLNPVKASRSHQELHRELLMNHRRGLGVDSKPELQRV
LEHRRRNQLIKKKKEELEAKRLQCPFEQELLRRQQRLNQLEKPPEKEEDHAPEFIKVRENLRRIATLTSE
EREL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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