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Report for CCDS28876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28876.1 Public Mus musculus 17 Satb1 23 108 98 CCDS HistoryNCBI Gene:20230Re-query CCDS DB by CCDS ID:28876.1Re-query CCDS DB by GeneID:20230See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28876.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000144331.7 ENSMUSP00000116006.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144331.7Link to Ensembl Protein Viewer:ENSMUSP00000116006.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144331Re-query CCDS DB by Protein ID:ENSMUSP00000116006
Original member Current member EBI ENSMUST00000129667.7 ENSMUSP00000116020.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129667.7Link to Ensembl Protein Viewer:ENSMUSP00000116020.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000129667Re-query CCDS DB by Protein ID:ENSMUSP00000116020
Original member Current member EBI ENSMUST00000152830.8 ENSMUSP00000119842.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152830.8Link to Ensembl Protein Viewer:ENSMUSP00000119842.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000152830Re-query CCDS DB by Protein ID:ENSMUSP00000119842
Original member Current member EBI ENSMUST00000133574.7 ENSMUSP00000120536.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133574.7Link to Ensembl Protein Viewer:ENSMUSP00000120536.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133574Re-query CCDS DB by Protein ID:ENSMUSP00000120536
Original member Current member EBI ENSMUST00000169480.7 ENSMUSP00000128841.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169480.7Link to Ensembl Protein Viewer:ENSMUSP00000128841.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169480Re-query CCDS DB by Protein ID:ENSMUSP00000128841
Original member Current member EBI ENSMUST00000176669.7 ENSMUSP00000134957.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176669.7Link to Ensembl Protein Viewer:ENSMUSP00000134957.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176669Re-query CCDS DB by Protein ID:ENSMUSP00000134957
Original member Current member NCBI NM_001163630.1 NP_001157102.1 Accepted alive Link to Nucleotide Sequence:NM_001163630.1Link to Protein Sequence:NP_001157102.1Re-query CCDS DB by Nucleotide ID:NM_001163630Re-query CCDS DB by Protein ID:NP_001157102Link to BLAST:NP_001157102.1
Original member Current member NCBI NM_001163631.1 NP_001157103.1 Accepted alive Link to Nucleotide Sequence:NM_001163631.1Link to Protein Sequence:NP_001157103.1Re-query CCDS DB by Nucleotide ID:NM_001163631Re-query CCDS DB by Protein ID:NP_001157103Link to BLAST:NP_001157103.1
Original member Current member NCBI NM_001163632.1 NP_001157104.1 Accepted alive Link to Nucleotide Sequence:NM_001163632.1Link to Protein Sequence:NP_001157104.1Re-query CCDS DB by Nucleotide ID:NM_001163632Re-query CCDS DB by Protein ID:NP_001157104Link to BLAST:NP_001157104.1
Original member Current member NCBI NM_001357638.1 NP_001344567.1 Accepted alive Link to Nucleotide Sequence:NM_001357638.1Link to Protein Sequence:NP_001344567.1Re-query CCDS DB by Nucleotide ID:NM_001357638Re-query CCDS DB by Protein ID:NP_001344567Link to BLAST:NP_001344567.1
Original member Current member NCBI NM_009122.2 NP_033148.2 Accepted alive Link to Nucleotide Sequence:NM_009122.2Link to Protein Sequence:NP_033148.2Re-query CCDS DB by Nucleotide ID:NM_009122Re-query CCDS DB by Protein ID:NP_033148Link to BLAST:NP_033148.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157102.1 764 Q60611 764 100% 0 0
NP_001157103.1 764 Q60611 764 100% 0 0
NP_001157104.1 764 Q60611 764 100% 0 0
NP_001344567.1 764 Q60611 764 100% 0 0
NP_033148.2 764 Q60611 764 100% 0 0

Chromosomal Locations for CCDS 28876.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 51739898 51740413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51742646 51742849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51767892 51768047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51775206 51775418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51782612 51783066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51785529 51785640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51803431 51803554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51804314 51804440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51805197 51805373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51809043 51809253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2295 nt):
ATGGATCATTTGAACGAGGCAACTCAGGGGAAAGAACATTCAGAAATGTCTAACAATGTGAGTGATCCGA
AGGGTCCACCCGCCAAGATTGCCCGCCTGGAGCAGAACGGGAGCCCTCTAGGAAGAGGAAGGCTTGGGAG
CACAGGTGGAAAGATGCAGGGAGTGCCTTTAAAACACTCGGGCCATCTCATGAAAACCAACCTTAGGAAA
GGAACCATGTTACCAGTTTTCTGCGTGGTGGAACATTATGAAAACGCCATTGAGTATGATTGCAAGGAGG
AGCACGCGGAATTTGTATTGGTGAGAAAGGATATGCTTTTCAACCAGCTGATAGAGATGGCGTTGCTGTC
TCTAGGCTATTCACACAGCTCTGCTGCCCAAGCCAAAGGGCTCATCCAGGTTGGGAAGTGGAATCCAGTT
CCACTGTCGTATGTGACAGATGCCCCTGATGCCACGGTGGCAGACATGCTTCAAGATGTGTATCATGTGG
TCACCCTCAAAATTCAGTTACACAGTTGCCCTAAACTAGAAGACTTGCCTCCTGAACAATGGTCGCACAC
CACAGTAAGGAATGCTCTGAAGGACTTACTGAAAGATATGAACCAGAGTTCGTTGGCCAAGGAGTGCCCC
CTTTCACAGAGCATGATCTCCTCCATTGTGAACAGCACGTACTATGCAAATGTCTCAGCAGCAAAATGTC
AAGAATTTGGAAGGTGGTACAAACATTTCAAGAAGACAAAGGATATGATGGTTGAGATGGATAGTCTGTC
TGAACTATCCCAGCAAGGTGCCAACCACGTCAATTTTGGCCAGCAGCCTGTCCCAGGAAACACAGCTGAG
CAGCCTCCATCCCCTGCGCAGCTCTCTCACGGCAGTCAGCCCTCTGTCCGGACCCCTCTTCCGAACCTGC
ACCCTGGGCTTGTGTCAACACCGATCAGTCCTCAGCTGGTCAACCAACAGCTGGTGATGGCTCAGTTGCT
GAACCAGCAGTATGCAGTGAACAGACTCTTAGCCCAGCAGTCCTTAAACCAACAGTACTTGAACCACCCT
CCCCCTGTCAGTAGGTCTATGAACAAGCCTTTGGAGCAGCAAGTTTCCACAAACACGGAGGTCTCTTCTG
AAATCTACCAGTGGGTGCGGGATGAACTGAAACGAGCCGGAATCTCACAGGCAGTATTTGCACGCGTGGC
TTTTAACCGAACTCAGGGATTGCTTTCTGAAATCCTCCGAAAGGAAGAGGACCCCAAGACTGCATCCCAG
TCTCTGCTGGTAAACCTTCGGGCTATGCAGAATTTCTTACAGTTGCCGGAAGCCGAAAGAGACCGGATAT
ACCAGGATGAGAGGGAAAGGAGCTTGAACGCAGCCTCAGCCATGGGTCCTGCCCCGCTGCTGAGCACACC
ACCCAGCCGCCCTCCCCAGGTGAAAACAGCTACCCTTGCCACTGAGAGAAATGGGAAGCCAGAGAACAAT
ACTATGAACATTAATGCCTCCATTTATGATGAGATTCAGCAGGAAATGAAGCGTGCTAAAGTGTCCCAAG
CACTGTTTGCAAAGGTTGCCGCCACAAAAAGCCAGGGATGGCTGTGTGAGCTGTTGCGCTGGAAAGAAGA
TCCTTCTCCAGAAAACAGGACCCTGTGGGAGAACCTGTCGATGATCCGAAGATTCCTCAGTCTGCCTCAG
CCTGAGCGCGATGCCATCTATGAGCAGGAGAGCAATGCTGTGCATCACCATGGCGACAGACCTCCCCACA
TCATCCACGTTCCAGCAGAACAGATTCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCA
GCCACCGCCGCCACCGCCGCAGCCACAGCCACAGCCCCAGGCAGGCCCCAGACTCCCCCCACGGCAGCCC
ACCGTGGCCTCCTCCGCGGAGTCCGATGAGGAAAACCGGCAGAAGACCAGGCCACGAACCAAAATTTCCG
TGGAAGCCCTGGGGATCCTTCAGAGTTTCATCCAAGATGTGGGCCTGTACCCAGATGAAGAGGCTATCCA
GACTCTGTCTGCACAGCTGGACCTCCCGAAGTACACCATCATCAAGTTCTTTCAGAACCAGCGGTACTAC
CTTAAGCACCATGGCAAGCTGAAGGACAACTCCGGCTTGGAGGTGGATGTGGCCGAGTACAAAGATGAGG
AGTTGCTTAAGGATTTGGAAGAGAGCGTCCAGGATAAAAACGCCAACACCCTTTTCTCAGTGAAACTAGA
GGAAGAGCTGTCGGTGGAAGGGAGCACAGACGTTAATGCCGACTTGAAAGACTGA

Translation (764 aa):
MDHLNEATQGKEHSEMSNNVSDPKGPPAKIARLEQNGSPLGRGRLGSTGGKMQGVPLKHSGHLMKTNLRK
GTMLPVFCVVEHYENAIEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPV
PLSYVTDAPDATVADMLQDVYHVVTLKIQLHSCPKLEDLPPEQWSHTTVRNALKDLLKDMNQSSLAKECP
LSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKTKDMMVEMDSLSELSQQGANHVNFGQQPVPGNTAE
QPPSPAQLSHGSQPSVRTPLPNLHPGLVSTPISPQLVNQQLVMAQLLNQQYAVNRLLAQQSLNQQYLNHP
PPVSRSMNKPLEQQVSTNTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQ
SLLVNLRAMQNFLQLPEAERDRIYQDERERSLNAASAMGPAPLLSTPPSRPPQVKTATLATERNGKPENN
TMNINASIYDEIQQEMKRAKVSQALFAKVAATKSQGWLCELLRWKEDPSPENRTLWENLSMIRRFLSLPQ
PERDAIYEQESNAVHHHGDRPPHIIHVPAEQIQQQQQQQQQQQQQQQPPPPPPQPQPQPQAGPRLPPRQP
TVASSAESDEENRQKTRPRTKISVEALGILQSFIQDVGLYPDEEAIQTLSAQLDLPKYTIIKFFQNQRYY
LKHHGKLKDNSGLEVDVAEYKDEELLKDLEESVQDKNANTLFSVKLEEELSVEGSTDVNADLKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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