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Report for CCDS2881.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2881.1 Public Homo sapiens 3 HESX1 24 110 108 CCDS HistoryNCBI Gene:8820Re-query CCDS DB by CCDS ID:2881.1Re-query CCDS DB by GeneID:8820See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2881.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295934.8 ENSP00000295934.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295934.8Link to Ensembl Protein Viewer:ENSP00000295934.3Re-query CCDS DB by Nucleotide ID:ENST00000295934Re-query CCDS DB by Protein ID:ENSP00000295934
Original member Current member EBI ENST00000647958.1 ENSP00000498190.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647958.1Link to Ensembl Protein Viewer:ENSP00000498190.1Re-query CCDS DB by Nucleotide ID:ENST00000647958Re-query CCDS DB by Protein ID:ENSP00000498190
Original member Current member NCBI NM_001376058.1 NP_001362987.1 Accepted alive Link to Nucleotide Sequence:NM_001376058.1Link to Protein Sequence:NP_001362987.1Re-query CCDS DB by Nucleotide ID:NM_001376058Re-query CCDS DB by Protein ID:NP_001362987Link to BLAST:NP_001362987.1
Original member Current member NCBI NM_001376059.1 NP_001362988.1 Accepted alive Link to Nucleotide Sequence:NM_001376059.1Link to Protein Sequence:NP_001362988.1Re-query CCDS DB by Nucleotide ID:NM_001376059Re-query CCDS DB by Protein ID:NP_001362988Link to BLAST:NP_001362988.1
Original member Current member NCBI NM_001376060.1 NP_001362989.1 Accepted alive Link to Nucleotide Sequence:NM_001376060.1Link to Protein Sequence:NP_001362989.1Re-query CCDS DB by Nucleotide ID:NM_001376060Re-query CCDS DB by Protein ID:NP_001362989Link to BLAST:NP_001362989.1
Original member Current member NCBI NM_001376061.1 NP_001362990.1 Accepted alive Link to Nucleotide Sequence:NM_001376061.1Link to Protein Sequence:NP_001362990.1Re-query CCDS DB by Nucleotide ID:NM_001376061Re-query CCDS DB by Protein ID:NP_001362990Link to BLAST:NP_001362990.1
Original member Current member NCBI NM_003865.3 NP_003856.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003865.3Link to Protein Sequence:NP_003856.1Re-query CCDS DB by Nucleotide ID:NM_003865Re-query CCDS DB by Protein ID:NP_003856Link to BLAST:NP_003856.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362987.1 185 Q9UBX0 185 100% 0 0
NP_001362988.1 185 Q9UBX0 185 100% 0 0
NP_001362989.1 185 Q9UBX0 185 100% 0 0
NP_001362990.1 185 Q9UBX0 185 100% 0 0
NP_003856.1 185 Q9UBX0 185 100% 0 0

Chromosomal Locations for CCDS 2881.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 57198197 57198295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57198391 57198492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57198753 57198952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57199762 57199918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGTCTCCCAGCCTTCAGGAAGGCGCTCAGCTCGGGGAAAACAAACCCTCAACTTGCTCCTTTTCAATTG
AGAGAATCTTAGGACTGGACCAGAAGAAAGACTGTGTTCCATTAATGAAACCCCACAGGCCCTGGGCAGA
CACCTGCAGCTCATCAGGGAAAGATGGTAACTTATGTCTACATGTCCCAAATCCTCCCAGTGGGATTTCA
TTCCCTAGCGTGGTGGATCACCCAATGCCAGAAGAAAGAGCTTCGAAATATGAAAATTACTTTTCAGCCT
CAGAAAGACTGTCTTTGAAAAGAGAGTTGAGTTGGTATAGAGGCCGAAGACCAAGAACTGCTTTTACTCA
AAACCAGATTGAAGTGTTAGAAAATGTCTTTAGAGTAAACTGCTATCCTGGTATCGATATTAGAGAAGAC
TTAGCTCAAAAATTGAATCTAGAGGAAGACAGAATCCAGATTTGGTTTCAAAATCGGCGTGCAAAACTGA
AAAGGTCCCATAGAGAATCACAGTTTCTAATGGCGAAAAAAAATTTCAACACAAATCTGCTGGAATAG

Translation (185 aa):
MSPSLQEGAQLGENKPSTCSFSIERILGLDQKKDCVPLMKPHRPWADTCSSSGKDGNLCLHVPNPPSGIS
FPSVVDHPMPEERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIRED
LAQKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNFNTNLLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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