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Report for CCDS2878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2878.1 Public Homo sapiens 3 ARHGEF3 24 110 108 CCDS HistoryNCBI Gene:50650Re-query CCDS DB by CCDS ID:2878.1Re-query CCDS DB by GeneID:50650See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296315.8 ENSP00000296315.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296315.8Link to Ensembl Protein Viewer:ENSP00000296315.3Re-query CCDS DB by Nucleotide ID:ENST00000296315Re-query CCDS DB by Protein ID:ENSP00000296315
Original member Current member NCBI NM_019555.3 NP_062455.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019555.3Link to Protein Sequence:NP_062455.1Re-query CCDS DB by Nucleotide ID:NM_019555Re-query CCDS DB by Protein ID:NP_062455Link to BLAST:NP_062455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062455.1 526 Q9NR81-1 526 100% 0 0

Chromosomal Locations for CCDS 2878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 56729270 56729622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56732238 56732424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56737185 56737355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56745205 56745462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56751056 56751132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56751300 56751396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56753504 56753566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56754981 56755151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56773709 56773816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56801703 56801798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGGTGGCCAAGGATTACCCCTTCTACCTCACGGTCAAGAGAGCGAACTGCAGCCTGGAGCTACCCCCGG
CCAGCGGTCCGGCCAAGGACGCTGAGGAGCCTAGTAATAAACGGGTCAAACCCCTTTCCCGAGTCACGTC
GCTAGCAAACCTCATCCCGCCCGTGAAGGCCACGCCATTAAAGCGCTTCAGTCAAACCCTGCAGCGCTCC
ATTAGCTTCCGCAGTGAGAGCCGCCCTGACATCCTCGCCCCCCGACCCTGGTCCAGAAATGCCGCCCCCT
CGAGCACGAAACGGAGAGATAGCAAGCTGTGGAGTGAGACCTTCGATGTGTGCGTCAATCAGATGCTTAC
ATCCAAGGAAATCAAACGTCAGGAGGCGATCTTTGAGCTTTCCCAAGGAGAAGAAGACTTGATAGAAGAC
TTGAAATTAGCAAAAAAGGCCTATCATGACCCCATGCTGAAACTCTCCATAATGACAGAACAAGAGTTGA
ATCAAATTTTTGGAACACTGGACTCTCTAATTCCTCTACATGAAGAGCTCCTTAGTCAGCTTCGAGATGT
TAGGAAGCCTGATGGCTCGACTGAACATGTTGGTCCCATCCTCGTGGGCTGGCTCCCTTGCCTCAGCTCC
TATGATAGCTACTGCAGCAATCAAGTAGCCGCCAAAGCTCTGCTGGACCACAAAAAGCAAGATCACCGAG
TCCAGGATTTCCTACAGCGATGTTTAGAATCCCCCTTTAGCCGCAAACTAGATCTCTGGAATTTCCTCGA
TATTCCAAGAAGCCGCCTGGTAAAATACCCTCTGCTTCTCCGAGAAATCTTGAGGCACACACCAAATGAT
AATCCAGATCAGCAGCACTTGGAAGAAGCTATAAATATCATTCAGGGAATTGTGGCAGAAATCAACACCA
AGACTGGTGAATCTGAATGCCGCTATTATAAAGAGCGGCTTCTTTACTTGGAAGAAGGCCAGAAAGACTC
CCTGATCGACAGCTCTCGAGTCTTGTGTTGTCATGGTGAACTGAAGAACAATCGGGGCGTGAAACTGCAT
GTTTTCCTGTTCCAAGAAGTGCTTGTGATCACTCGAGCCGTCACCCACAATGAGCAGCTTTGCTACCAGC
TGTACCGTCAGCCAATCCCCGTGAAAGACCTCCTGCTGGAAGACCTCCAGGATGGAGAAGTGAGGCTGGG
TGGCTCCCTGCGAGGGGCATTCAGCAACAATGAGAGAATTAAAAACTTCTTCAGAGTCAGTTTCAAAAAT
GGATCCCAAAGTCAGACCCACTCGCTACAAGCCAATGACACTTTCAACAAACAGCAGTGGCTTAACTGTA
TTCGTCAAGCCAAAGAAACAGTTTTGTGTGCTGCCGGGCAAGCTGGGGTGCTTGACTCCGAGGGATCGTT
CCTAAATCCCACCACCGGGAGCAGAGAGCTACAGGGAGAAACAAAACTTGAGCAGATGGACCAATCGGAC
AGTGAGTCAGACTGTAGTATGGACACGAGTGAGGTCAGCCTCGACTGTGAGCGCATGGAACAGACAGACT
CTTCCTGTGGAAACAGCAGGCACGGTGAAAGTAACGTCTGA

Translation (526 aa):
MVAKDYPFYLTVKRANCSLELPPASGPAKDAEEPSNKRVKPLSRVTSLANLIPPVKATPLKRFSQTLQRS
ISFRSESRPDILAPRPWSRNAAPSSTKRRDSKLWSETFDVCVNQMLTSKEIKRQEAIFELSQGEEDLIED
LKLAKKAYHDPMLKLSIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKPDGSTEHVGPILVGWLPCLSS
YDSYCSNQVAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPND
NPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQKDSLIDSSRVLCCHGELKNNRGVKLH
VFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLLLEDLQDGEVRLGGSLRGAFSNNERIKNFFRVSFKN
GSQSQTHSLQANDTFNKQQWLNCIRQAKETVLCAAGQAGVLDSEGSFLNPTTGSRELQGETKLEQMDQSD
SESDCSMDTSEVSLDCERMEQTDSSCGNSRHGESNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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