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Report for CCDS28657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28657.1 Public Mus musculus 17 C4b 23 108 98 CCDS HistoryNCBI Gene:12268Re-query CCDS DB by CCDS ID:28657.1Re-query CCDS DB by GeneID:12268See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28657.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069507.8 ENSMUSP00000069418.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069507.8Link to Ensembl Protein Viewer:ENSMUSP00000069418.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000069507Re-query CCDS DB by Protein ID:ENSMUSP00000069418
Original member Current member NCBI NM_009780.2 NP_033910.2 Accepted alive Link to Nucleotide Sequence:NM_009780.2Link to Protein Sequence:NP_033910.2Re-query CCDS DB by Nucleotide ID:NM_009780Re-query CCDS DB by Protein ID:NP_033910Link to BLAST:NP_033910.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033910.2 1738 P01029 1738 100% 0 0

Chromosomal Locations for CCDS 28657.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34728486 34728627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34728765 34728897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34729182 34729265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34729400 34729498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34729576 34729665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34729804 34729906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34730420 34730494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34730624 34730714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34730809 34730989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34731076 34731169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34732170 34732229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34732724 34732891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34732973 34733205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34733400 34733571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34733660 34733776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34733872 34734028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34734132 34734207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34734366 34734575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34734701 34734790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34734877 34734928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34735404 34735607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34735736 34735875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34736065 34736135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34736240 34736354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34736447 34736641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34736895 34736969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34737633 34737759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34738843 34739001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34739655 34739840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34739936 34740121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34740267 34740443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34740529 34740644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34740962 34741094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34741170 34741275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34741791 34741887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34741988 34742070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34742364 34742452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34742532 34742602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34742811 34743012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34743469 34743661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34743762 34743826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5217 nt):
ATGCGGCTCCTCTGGGGGCTGGCCTGGGTGTTCAGCTTCTGTGCCTCATCCCTGCAGAAGCCCAGGTTGC
TCCTGTTTTCCCCTTCTGTGGTTAATTTGGGGACCCCCCTGTCGGTGGGGGTACAGCTCCTGGATGCCCC
TCCAGGACAGGAGGTAAAAGGATCAGTGTTCCTCAGAAACCCAAAGGGTGGTTCCTGCTCCCCAAAGAAG
GACTTTAAGCTGAGCTCGGGAGATGACTTTGTGCTGCTCAGCCTTGAGGTCCCACTGGAAGATGTGAGGA
GCTGTGGCCTCTTTGACCTGCGCAGAGCCCCCCACATCCAGCTGGTAGCTCAGTCTCCGTGGCTAAGGAA
CACAGCTTTCAAAGCCACAGAGACTCAGGGTGTCAACTTGCTCTTCTCTTCCCGACGAGGCCACATCTTT
GTGCAGACCGATCAGCCTATCTATAATCCGGGGCAGCGGGTTCGTTATCGGGTCTTTGCACTGGATCAAA
AGATGCGCCCATCCACTGATTTCCTCACCATCACAGTGGAGAACTCCCATGGCCTCCGTGTACTCAAGAA
GGAGATATTTACTTCCACATCCATCTTCCAAGATGCCTTCACCATTCCAGACATCTCAGAGCCTGGGACC
TGGAAGATCTCAGCTAGGTTCTCAGATGGACTGGAGTCCAATAGGAGCACCCACTTTGAAGTGAAGAAGT
ATGTCCTTCCCAACTTCGAGGTGAAGATTACTCCTTGGAAGCCATATATCCTGATGGTGCCCAGCAACAG
TGATGAAATCCAATTAGACATCCAGGCCAGGTACATCTATGGGAAGCCCGTGCAGGGCGTGGCATACACA
CGGTTTGCGCTCATGGATGAGCAAGGGAAGAGGACTTTCCTTCGGGGCCTAGAGACGCAGGCCAAGTTGG
TGGAAGGCCGGACCCACATTTCCATCTCAAAGGACCAGTTCCAGGCTGCCCTGGATAAAATCAATATTGG
GGTCAGAGACCTGGAGGGGCTGCGTCTCTATGCTGCTACAGCTGTCATCGAGTCTCCAGGAGGAGAGATG
GAGGAGGCAGAACTCACGTCCTGGCGCTTTGTATCATCTGCCTTCTCCTTGGATCTCAGCCGCACTAAGA
GGCATCTTGTGCCTGGGGCCCACTTCCTGCTGCAGGCTCTGGTCCAAGAAATGTCAGGCTCTGAAGCCTC
CAACGTTCCTGTTAAAGTCTCTGCCACATTGGTGTCAGGCTCTGACTCCCAAGTCCTTGACATTCAACAG
AGCACCAATGGAATTGGCCAAGTCAGCATTTCCTTCCCCATCCCACCAACTGTCACAGAACTTCGACTCT
TGGTGTCTGCGGGCTCCCTCTACCCAGCCATAGCCAGGCTCACCGTGCAAGCCCCACCTTCAAGAGGCAC
TGGCTTTCTTTCTATTGAGCCACTAGACCCTCGGTCCCCTAGTGTGGGGGACACCTTTATCCTAAACCTT
CAACCTGTGGGCATCCCTGCACCTACCTTCTCTCATTACTACTACATGATCATCTCCAGAGGCCAGATCA
TGGCTATGGGTCGGGAGCCCCGGAAGACTGTGACCTCCGTCTCTGTGTTGGTGGACCATCAGCTGGCTCC
CTCGTTCTACTTTGTGGCTTACTTCTATCACCAAGGACACCCGGTGGCCAACTCTCTGCTCATCAACATC
CAATCCAGGGACTGTGAGGGCAAGCTGCAATTGAAGGTGGATGGTGCCAAGGAGTATCGTAATGCGGACA
TGATGAAGCTCCGAATTCAAACTGACTCCAAAGCCCTGGTGGCACTGGGAGCTGTGGACATGGCTCTGTA
TGCTGTGGGTGGTCGGTCTCACAAACCCCTCGACATGAGCAAGGTCTTTGAAGTAATCAACAGCTACAAT
GTTGGCTGTGGTCCTGGAGGTGGGGATGATGCCCTTCAGGTGTTCCAGGATGCTGGTCTGGCCTTTTCTG
ATGGTGATCGACTAACTCAAACCAGAGAGGACCTGAGCTGTCCCAAGGAGAAGAAAAGTCGGCAAAAGAG
AAATGTTAACTTCCAGAAGGCTGTCAGTGAGAAGTTGGGCCAGTATTCTTCTCCAGATGCCAAGCGCTGC
TGCCAAGACGGGATGACGAAGCTGCCCATGAAGCGTACCTGTGAGCAGCGGGCTGCCCGTGTGCCTCAGC
AGGCCTGCCGTGAGCCCTTCTTGTCCTGTTGCAAGTTTGCTGAGGACCTTCGCAGGAACCAGACCAGGAG
CCAGGCACACCTTGCCCGAAACAACCACAACATGCTGCAGGAGGAAGACTTGATAGATGAAGACGACATT
CTTGTGCGCACCTCCTTCCCAGAGAACTGGCTCTGGAGAGTGGAACCTGTAGACAGCTCCAAACTGTTGA
CAGTGTGGCTTCCTGATTCTATGACCACATGGGAGATTCATGGTGTGAGCCTGTCCAAAAGCAAAGGTCT
GTGTGTAGCCAAGCCAACTCGTGTTCGAGTGTTCAGAAAATTCCACCTGCACCTGCGCCTGCCCATCTCC
ATCCGCCGCTTTGAGCAGTTTGAATTACGGCCTGTTCTTTACAACTATCTGAATGATGATGTGGCTGTGA
GTGTCCATGTGACCCCAGTTGAGGGGCTGTGCCTGGCTGGTGGTGGAATGATGGCCCAGCAGGTGACAGT
GCCAGCAGGTTCTGCCCGGCCTGTGGCCTTCTCTGTGGTACCCACAGCTGCTGCCAACGTGCCCCTGAAG
GTGGTGGCTCGAGGGGTTTTTGATTTAGGGGATGCTGTGTCTAAGATTCTCCAAATTGAGAAGGAAGGAG
CCATCCACAGAGAAGAGTTAGTCTACAACCTCGACCCCCTAAATAACCTGGGTCGGACTTTGGAGATTCC
TGGCAGCTCGGATCCCAACATCGTCCCTGACGGAGACTTCAGCAGCTTAGTCAGGGTTACAGCCTCGGAA
CCCTTGGAGACTATGGGTTCTGAAGGTGCCTTGTCCCCAGGAGGTGTGGCCTCCCTCCTGAGGCTTCCCC
AGGGCTGTGCAGAGCAAACCATGATCTATTTGGCTCCTACCCTGACTGCTTCCAACTACCTGGACAGGAC
AGAACAGTGGAGCAAACTGTCCCCTGAAACAAAGGACCATGCTGTGGATCTGATCCAAAAAGGATACATG
AGGATCCAGCAGTTTCGGAAGAATGATGGCTCCTTTGGGGCTTGGTTACACCGGGACAGCAGCACCTGGC
TGACTGCCTTCGTGCTGAAGATTCTGAGTTTGGCCCAGGAACAGGTGGGCAACTCCCCGGAGAAGCTGCA
GGAGACGGCTAGCTGGCTGCTGGCCCAGCAGCTGGGTGATGGCTCCTTCCACGACCCATGTCCAGTCATC
CACAGAGCAATGCAGGGGGGCTTGGTGGGGTCTGACGAGACAGTGGCACTGACCGCCTTTGTGGTCATTG
CCCTTCACCATGGGTTGGACGTCTTCCAGGATGACGATGCGAAGCAGCTGAAGAACAGAGTGGAAGCCTC
CATCACCAAGGCAAACTCATTCTTGGGGCAGAAGGCAAGTGCTGGGCTCCTGGGTGCCCATGCCGCCGCC
ATCACAGCCTATGCCCTTACGCTGACCAAGGCCTCGGAGGACCTGCGGAATGTTGCCCACAACAGCCTGA
TGGCCATGGCTGAGGAAACAGGGGAACACCTCTACTGGGGCTTAGTCCTTGGCTCTCAGGACAAAGTTGT
GTTGCGCCCCACAGCCCCCCGTAGCCCTACAGAACCTGTGCCCCAGGCCCCAGCCTTGTGGATCGAAACC
ACAGCCTATGCCCTGCTCCACCTGCTTCTGCGGGAGGGAAAGGGAAAAATGGCTGACAAGGCTGCATCCT
GGCTCACCCACCAGGGAAGCTTCCATGGGGCATTCCGCAGTACCCAGGACACTGTGGTCACCCTGGATGC
CCTGTCTGCCTACTGGATCGCTTCGCACACCACTGAGGAGAAAGCACTGAACGTGACGCTCAGCTCCATG
GGCCGCAATGGGCTTAAGACCCACGGGCTACACTTGAACAACCACCAAGTCAAGGGCCTGGAGGAGGAGC
TAAAGTTCTCCCTGGGCAGCACAATCAGTGTCAAGGTGGAAGGAAACAGCAAAGGCACCTTGAAGATCCT
TCGTACCTACAATGTCCTGGACATGAAGAACACCACATGCCAGGACCTTCAGATAGAAGTGAAGGTCACA
GGCGCTGTGGAATACGCATGGGATGCCAATGAAGACTACGAAGACTACTATGACATGCCAGCCGCAGATG
ACCCCAGCGTCCCCTTGCAGCCTGTCACGCCCCTGCAGCTTTTTGAGGGTCGTAGGAGCCGCCGCAGGAG
GGAGGCCCCCAAGGTGGTCGAAGAGCAGGAGTCCAGAGTTCAGTACACTGTGTGTATCTGGCGAAATGGC
AAGCTGGGGCTGTCTGGCATGGCCATCGCAGACATCACCCTCCTAAGTGGATTCCACGCCCTGAGGGCTG
ACCTGGAGAAGCTGACCTCTCTCTCTGACCGTTACGTGAGTCACTTTGAGACTGACGGGCCCCATGTCCT
GTTGTACTTTGACTCGGTCCCTACCACCCGGGAGTGTGTGGGCTTCGGAGCCTCGCAGGAGGTGGTTGTG
GGACTGGTGCAGCCATCCAGTGCTGTCCTGTATGACTACTACAGCCCTGATCACAAGTGCTCTGTGTTTT
ATGCTGCACCCACCAAGAGCCAGCTCCTGGCCACACTGTGCTCTGGAGATGTATGCCAGTGCGCTGAGGG
GAAGTGCCCTCGACTGCTAAGGTCACTGGAGCGAAGGGTGGAGGACAAGGACGGCTACCGGATGAGGTTC
GCCTGCTATTATCCCCGAGTGGAGTATGGCTTCACGGTTAAGGTTCTTCGAGAAGATGGCAGAGCTGCCT
TCCGTCTCTTTGAGTCCAAGATCACCCAAGTCCTGCATTTCAGAAAGGACACCATGGCCTCCATAGGTCA
GACCCGCAACTTCCTGAGCCGGGCCTCTTGCCGCCTTCGTTTGGAGCCTAACAAAGAGTACTTGATCATG
GGGATGGACGGGGAAACCAGTGACAACAAGGGAGACCCCCAGTACTTGCTGGACTCAAATACCTGGATTG
AGGAGATGCCTTCAGAACAAATGTGCAAGAGCACCCGCCATCGGGCAGCCTGTTTCCAGCTCAAAGACTT
CCTGATGGAGTTCAGCAGCCGGGGGTGCCAGGTGTGA

Translation (1738 aa):
MRLLWGLAWVFSFCASSLQKPRLLLFSPSVVNLGTPLSVGVQLLDAPPGQEVKGSVFLRNPKGGSCSPKK
DFKLSSGDDFVLLSLEVPLEDVRSCGLFDLRRAPHIQLVAQSPWLRNTAFKATETQGVNLLFSSRRGHIF
VQTDQPIYNPGQRVRYRVFALDQKMRPSTDFLTITVENSHGLRVLKKEIFTSTSIFQDAFTIPDISEPGT
WKISARFSDGLESNRSTHFEVKKYVLPNFEVKITPWKPYILMVPSNSDEIQLDIQARYIYGKPVQGVAYT
RFALMDEQGKRTFLRGLETQAKLVEGRTHISISKDQFQAALDKINIGVRDLEGLRLYAATAVIESPGGEM
EEAELTSWRFVSSAFSLDLSRTKRHLVPGAHFLLQALVQEMSGSEASNVPVKVSATLVSGSDSQVLDIQQ
STNGIGQVSISFPIPPTVTELRLLVSAGSLYPAIARLTVQAPPSRGTGFLSIEPLDPRSPSVGDTFILNL
QPVGIPAPTFSHYYYMIISRGQIMAMGREPRKTVTSVSVLVDHQLAPSFYFVAYFYHQGHPVANSLLINI
QSRDCEGKLQLKVDGAKEYRNADMMKLRIQTDSKALVALGAVDMALYAVGGRSHKPLDMSKVFEVINSYN
VGCGPGGGDDALQVFQDAGLAFSDGDRLTQTREDLSCPKEKKSRQKRNVNFQKAVSEKLGQYSSPDAKRC
CQDGMTKLPMKRTCEQRAARVPQQACREPFLSCCKFAEDLRRNQTRSQAHLARNNHNMLQEEDLIDEDDI
LVRTSFPENWLWRVEPVDSSKLLTVWLPDSMTTWEIHGVSLSKSKGLCVAKPTRVRVFRKFHLHLRLPIS
IRRFEQFELRPVLYNYLNDDVAVSVHVTPVEGLCLAGGGMMAQQVTVPAGSARPVAFSVVPTAAANVPLK
VVARGVFDLGDAVSKILQIEKEGAIHREELVYNLDPLNNLGRTLEIPGSSDPNIVPDGDFSSLVRVTASE
PLETMGSEGALSPGGVASLLRLPQGCAEQTMIYLAPTLTASNYLDRTEQWSKLSPETKDHAVDLIQKGYM
RIQQFRKNDGSFGAWLHRDSSTWLTAFVLKILSLAQEQVGNSPEKLQETASWLLAQQLGDGSFHDPCPVI
HRAMQGGLVGSDETVALTAFVVIALHHGLDVFQDDDAKQLKNRVEASITKANSFLGQKASAGLLGAHAAA
ITAYALTLTKASEDLRNVAHNSLMAMAEETGEHLYWGLVLGSQDKVVLRPTAPRSPTEPVPQAPALWIET
TAYALLHLLLREGKGKMADKAASWLTHQGSFHGAFRSTQDTVVTLDALSAYWIASHTTEEKALNVTLSSM
GRNGLKTHGLHLNNHQVKGLEEELKFSLGSTISVKVEGNSKGTLKILRTYNVLDMKNTTCQDLQIEVKVT
GAVEYAWDANEDYEDYYDMPAADDPSVPLQPVTPLQLFEGRRSRRRREAPKVVEEQESRVQYTVCIWRNG
KLGLSGMAIADITLLSGFHALRADLEKLTSLSDRYVSHFETDGPHVLLYFDSVPTTRECVGFGASQEVVV
GLVQPSSAVLYDYYSPDHKCSVFYAAPTKSQLLATLCSGDVCQCAEGKCPRLLRSLERRVEDKDGYRMRF
ACYYPRVEYGFTVKVLREDGRAAFRLFESKITQVLHFRKDTMASIGQTRNFLSRASCRLRLEPNKEYLIM
GMDGETSDNKGDPQYLLDSNTWIEEMPSEQMCKSTRHRAACFQLKDFLMEFSSRGCQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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