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Report for CCDS28646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28646.1 Public Mus musculus 17 H2-Eb2 23 108 98 CCDS HistoryNCBI Gene:381091Re-query CCDS DB by CCDS ID:28646.1Re-query CCDS DB by GeneID:381091See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050325.9 ENSMUSP00000056814.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050325.9Link to Ensembl Protein Viewer:ENSMUSP00000056814.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000050325Re-query CCDS DB by Protein ID:ENSMUSP00000056814
Original member Current member NCBI NM_001033978.3 NP_001029150.1 Accepted alive Link to Nucleotide Sequence:NM_001033978.3Link to Protein Sequence:NP_001029150.1Re-query CCDS DB by Nucleotide ID:NM_001033978Re-query CCDS DB by Protein ID:NP_001029150Link to BLAST:NP_001029150.1

Chromosomal Locations for CCDS 28646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34325692 34325791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34333283 34333549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34334209 34334490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34335775 34335885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34338808 34338911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGTGTCTCTGTGGCTCCCCAGAGGCCTCTGTGTGGCAGCTGTGATCCTGAGTCTGATGATGCTGACCC
CTCCGGTGATTTTAGTCAGGGACCCACGACCACGTTTTCTGGAGCAGTTGAAGGCTGAGTGTCACTACTT
CAATGGGAAGGAGCGTGTGTGGAGTGTGACCAGATTCATCTATAACCAGGAAGAGTTTGCCCGCTTTAAC
AGTGACTTTGGGAAGTTCCTGGCAGTGACTGAGCTGGGGCGGCCCATAGTTGAGTACTTGAACACCCAGA
AGGACATGCTGGACAATTATCGTGCCTCAGTAGACAGGTGCAGAAATAACTATGACCTTGTGGATATCTT
CATGTTGAACTTAAAAGCTGAGCCCAAGGTGACTGTGTACCCTGCAAAGACACAGCCTCTGGAACACCAT
AACCTCCTGGTCTGCTCTGTGATTGACTTCTACCCTGGCAGCATTGAAGTCAGATGGTTCCGGAATGGCG
AGGAGGAGAAGACTGGAGTTGTGTCCACTGGACTGATCCAAAATAGAGACTGGACCTACCAGACCCTGGT
GATGCTGGAGATGGTTCCTCGGGGTGGAGAGGTTTACACCTGCCAGGTGGAGCATCCCAGCCTGACCAGC
CCTGTCACAGTGGAGTGGAGGGCTCGGTCCACATCTGCACAGAACAAGTTGTTGAGCGGAGTCATGGGCA
TGGCGCTAGGTCTGTTCATCCTCGCAGTGGGGCTGTTCTTCTATTTAAGGAATCTGAGAGCAGGATCAGT
GTCTCATGGTGCTGGTGAAGGAGCTGAAAGTTTCACATCCAGATTGACAGGCAGTGGGAGTGAATGCCAC
ATGGGGCCTGGGTTGAGCATCTGA

Translation (287 aa):
MVSLWLPRGLCVAAVILSLMMLTPPVILVRDPRPRFLEQLKAECHYFNGKERVWSVTRFIYNQEEFARFN
SDFGKFLAVTELGRPIVEYLNTQKDMLDNYRASVDRCRNNYDLVDIFMLNLKAEPKVTVYPAKTQPLEHH
NLLVCSVIDFYPGSIEVRWFRNGEEEKTGVVSTGLIQNRDWTYQTLVMLEMVPRGGEVYTCQVEHPSLTS
PVTVEWRARSTSAQNKLLSGVMGMALGLFILAVGLFFYLRNLRAGSVSHGAGEGAESFTSRLTGSGSECH
MGPGLSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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