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Report for CCDS28274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28274.1 Public Mus musculus 16 Nrip1 23 108 98 CCDS HistoryNCBI Gene:268903Re-query CCDS DB by CCDS ID:28274.1Re-query CCDS DB by GeneID:268903See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28274.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054178.7 ENSMUSP00000051726.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054178.7Link to Ensembl Protein Viewer:ENSMUSP00000051726.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000054178Re-query CCDS DB by Protein ID:ENSMUSP00000051726
Original member Current member EBI ENSMUST00000121927.7 ENSMUSP00000112959.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121927.7Link to Ensembl Protein Viewer:ENSMUSP00000112959.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121927Re-query CCDS DB by Protein ID:ENSMUSP00000112959
Original member Current member NCBI NM_001358238.1 NP_001345167.1 Accepted alive Link to Nucleotide Sequence:NM_001358238.1Link to Protein Sequence:NP_001345167.1Re-query CCDS DB by Nucleotide ID:NM_001358238Re-query CCDS DB by Protein ID:NP_001345167Link to BLAST:NP_001345167.1
Original member Current member NCBI NM_173440.3 NP_775616.1 Accepted alive Link to Nucleotide Sequence:NM_173440.3Link to Protein Sequence:NP_775616.1Re-query CCDS DB by Nucleotide ID:NM_173440Re-query CCDS DB by Protein ID:NP_775616Link to BLAST:NP_775616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345167.1 1161 Q8CBD1 1161 100% 0 0
NP_775616.1 1161 Q8CBD1 1161 100% 0 0

Chromosomal Locations for CCDS 28274.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 76291182 76294667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3486 nt):
ATGACTCATGGAGAAGAGCTTGGCTCTGATGTGCATCAGGATTCTATTGTCTTAACTTACCTCGAAGGGT
TACTAATGCATCAGGCAGCAGGGGGATCAGGCACTGCCATTAACAAAAAGTCTGCTGGCCACAAAGAGGA
AGACCAGAACTTTAACCTCTCGGGCAGTGCGTTTCCCTCCTGTCAAAGCAATGGTCCCACTGTCAGTACC
CAGACGTACCAGGGATCTGGCATGCTGCACCTCAAAAAAGCCAGACTGCTGCAGTCTTCCGAGGACTGGA
ACGCGGCAAAGCGGAAGAGGCTGTCTGATTCCATCGTGAATTTAAACGTAAAGAAGGAAGCGTTGCTGGC
TGGCATGGTTGACAGTGTGCCTAAAGGCAAACAGGATAGCACATTGCTGGCCTCTTTGCTTCAGTCATTC
AGCTCTAGGCTGCAGACTGTTGCTCTGTCACAGCAGATTAGACAGAGCCTCAAGGAGCAGGGATATGCCC
TCAGTCACGAGTCTTTAAAAGTGGAGAAGGATTTAAGGTGCTATGGCGTGGCCTCAAGTCACTTAAAAAC
TCTGTTGAAGAAAAGTAAAACCAAGGATCAAAAGTCAGGTCCCACCCTCCCTGACGTGACTCCAAACCTT
ATCAGAGATAGCTTTGTTGAGTCATCCCATCCCGCAGTGGGACAAAGTGGGACAAAGGTCATGAGTGAGC
CCTTGTCATGTGCTGCAAGATTACAGGCTGTTGCCAGCATGGTGGAGAAAAGGGCGAGTCCCGCTGCCTC
CCCAAAGCCTAGTGTTGCCTGCAGCCAGTTGGCGCTGCTCCTGTCCAGCGAGGCCCACCTGCAGCAGTAC
TCTCGGGAACATGCTCTAAAAACGCAGAACGCACATCAGGTGGCAAGCGAAAGACTTGCAGCCATGGCCA
GATTGCAAGAGAATGGGCAGAAGGACGTGGGCAGTTCGCAGCTCTCCAAAGGGGTGTCTGGCCATCTCAA
CGGGCAGGCCAGAGCACTGCCGGCAAGCAAACTGGTGGCCAACAAGAATAACGCTGCCACCTTTCAGAGT
CCAATGGGTGTTGTCCCTTCCTCCCCCAAAAACACGAGCTATAAGAACTCACTGGAAAGAAACAACCTAA
AGCAGGCTGCTAATAACAGTCTGCTTTTGCATCTCCTCAAAAGCCAGACCATACCCACGCCGATGAACGG
GCACAGCCAGAACGAGAGAGCGAGCAGTTTTGAGAGTAGCACGCCCACCACGATTGATGAGTACTCCGAT
AACAACCCGAGCTTTACAGATGACAGCAGTGGAGACGAAAGCTCGTACTCCAATTGCGTTCCCATAGACC
TGTCTTGCAAACACCGGATCGAAAAGCCGGAAGCTGAGCGGCCCGTTTCGCTGGAGAACCTAACCCAGTC
CTTGTTAAACACGTGGGATCCCAAGATCCCCGGCGTTGACATCAAAGAAGATCAAGATACCTCAACAAAT
TCCAAGCTGAATTCACACCAGAAAGTCACTCTTCTTCAGTTGCTGCTCGGCCATAAAAGTGAAGAAACTG
TTGAAAGGAACGCCAGCCCTCAGGACATCCATAGTGATGGGACTAAGTTCAGTCCTCAGAATTACACAAG
GACTTCTGTCATCGAAAGCCCCAGTACCAACAGGACTACCCCAGTGAGCACTCCACCACTGTATACAGCC
AGCCAAGCAGAGTCTCCCATCAATCTTTCCCAGCACTCTCTGGTCATCAAGTGGAATTCCCCGCCGTATG
CCTGCAGTACTCCCGCTTCCAAGCTCACGAACACCGCGCCTAGCCACCTGATGGACCTCACGAAAGGCAA
AGAGTCCCAAGCCGAGAAACCAGCCCCGAGTGAAGGTGCACAAAATTCCGCCACGTTCAGTGCCAGTAAA
CTGTTACAAAATTTGGCTCAGTGCGGATTGCAGTCTTCCGGGCCAGGGGAAGAGCAGAGACCCTGCAAAC
AGCTGTTAAGTGGAAACCCAGACAAACCTCTCGGTCTGATTGATAGATTAAACAGCCCTCTGCTCTCAAA
TAAAACCAATGCGGCTGAAGAGAGCAAAGCCTTCAGCAGTCAGCCTGCCGGGCCTGAGCCGGGACTTCCT
GGTTGTGAGATAGAAAATCTCTTGGAAAGACGGACTGTCCTTCAGTTGCTCCTGGGAAATTCCAGCAAAG
GGAAGAATGAGAAGAAAGAGAAAACCCCCGCACGAGACGAGGCTCCTCAGGAGCATTCGGAGAGGGCTGC
AAATGAACAGATACTCATGGTGAAGATTAAATCCGAGCCTTGTGACGACTTCCAGACCCACAACACAAAC
CTGCCCTTAAACCACGATGCCAAGAGCGCCCCCTTCTTAGGTGTGACTCCCGCCATCCACAGGAGCACAG
CGGCCTTACCAGTGTCGGAGGACTTTAAATCCGAGCCTGCTTCACCTCAGGATTTCTCTTTCTCAAAGAA
CGGGCTGTTGAGTCGCTTGCTGAGACAGAATCAAGAGAGTTACCCGGCAGATGAGCAGGACAAGAGTCAC
AGAAACAGTGAGCTGCCAACCCTGGAGTCGAAGAACATCTGCATGGTCCCGAAGAAAAGGAAGCTGTATA
CGGAACCACTGGAGAATCCATTTAAAAAGATGAAAAATACTGCCGTAGATACTGCCAATCATCACAGCGG
CCCGGAAGTACTCTACGGGTCGTTGCTTCATCAGGAAGAGCTGAAGTTTAGCAGGAATGAGCTCGATTAT
AAATACCCTGCTGGGCATAGTTCAGCCAGCGATGGTGACCACAGGAGTTGGGCCAGAGAGAGCAAAAGCT
TCAATGTTCTCAAGCAGCTGCTGCTCTCCGAGAACTGTGTGCGAGATCTGTCCCCACACAGGAGTGACTC
TGTCCCCGACACGAAAAAGAAAGGACACAAAAACAACGCGCCCGGCAGCAAACCTGAATTCGGCATTTCT
TCTTTAAATGGACTGATGTATAGTTCCCCGCAGCCTGGCAGTTGTGTGACGGATCATAGGACATTTTCAT
ACCCGGGAATGGTAAAGACCCCTCTGAGCCCTCCTTTCCCAGAGCACTTGGGCTGTGTGGGGTCCAGACC
AGAACCTGGGCTTTTGAATGGATGTTCCGTGCCCGGTGAGAAGGGACCCATTAAGTGGGTCATCGCAGAT
ATGGATAAGAATGAATACGAAAAAGACTCTCCAAGACTGACCAAAACTAATCCGATCCTCTATTACATGC
TCCAGAAGGGAGGGGGCAATTCTGTTACCACACAAGAAACCCAGGACAAAGACATCTGGAGGGAGCCTGC
GTCAGCCGAGAGTCTCTCACAGGTTACAGTCAAAGAAGAGCTACTTCCCGCTGCAGAAACTAAAGCTTCT
TTCTTTAATCTAAGAAGCCCGTACAATAGCCATATGGGAAATAATGCTTCTCGCCCACACAGTACAAATG
GAGAAGTGTATGGACTTCTGGGAAACGCGCTCACCATAAAAAAAGAGTCAGAATAA

Translation (1161 aa):
MTHGEELGSDVHQDSIVLTYLEGLLMHQAAGGSGTAINKKSAGHKEEDQNFNLSGSAFPSCQSNGPTVST
QTYQGSGMLHLKKARLLQSSEDWNAAKRKRLSDSIVNLNVKKEALLAGMVDSVPKGKQDSTLLASLLQSF
SSRLQTVALSQQIRQSLKEQGYALSHESLKVEKDLRCYGVASSHLKTLLKKSKTKDQKSGPTLPDVTPNL
IRDSFVESSHPAVGQSGTKVMSEPLSCAARLQAVASMVEKRASPAASPKPSVACSQLALLLSSEAHLQQY
SREHALKTQNAHQVASERLAAMARLQENGQKDVGSSQLSKGVSGHLNGQARALPASKLVANKNNAATFQS
PMGVVPSSPKNTSYKNSLERNNLKQAANNSLLLHLLKSQTIPTPMNGHSQNERASSFESSTPTTIDEYSD
NNPSFTDDSSGDESSYSNCVPIDLSCKHRIEKPEAERPVSLENLTQSLLNTWDPKIPGVDIKEDQDTSTN
SKLNSHQKVTLLQLLLGHKSEETVERNASPQDIHSDGTKFSPQNYTRTSVIESPSTNRTTPVSTPPLYTA
SQAESPINLSQHSLVIKWNSPPYACSTPASKLTNTAPSHLMDLTKGKESQAEKPAPSEGAQNSATFSASK
LLQNLAQCGLQSSGPGEEQRPCKQLLSGNPDKPLGLIDRLNSPLLSNKTNAAEESKAFSSQPAGPEPGLP
GCEIENLLERRTVLQLLLGNSSKGKNEKKEKTPARDEAPQEHSERAANEQILMVKIKSEPCDDFQTHNTN
LPLNHDAKSAPFLGVTPAIHRSTAALPVSEDFKSEPASPQDFSFSKNGLLSRLLRQNQESYPADEQDKSH
RNSELPTLESKNICMVPKKRKLYTEPLENPFKKMKNTAVDTANHHSGPEVLYGSLLHQEELKFSRNELDY
KYPAGHSSASDGDHRSWARESKSFNVLKQLLLSENCVRDLSPHRSDSVPDTKKKGHKNNAPGSKPEFGIS
SLNGLMYSSPQPGSCVTDHRTFSYPGMVKTPLSPPFPEHLGCVGSRPEPGLLNGCSVPGEKGPIKWVIAD
MDKNEYEKDSPRLTKTNPILYYMLQKGGGNSVTTQETQDKDIWREPASAESLSQVTVKEELLPAAETKAS
FFNLRSPYNSHMGNNASRPHSTNGEVYGLLGNALTIKKESE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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