NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28273.1 Public Mus musculus 16 Hspa13 23 108 98 CCDS HistoryNCBI Gene:110920Re-query CCDS DB by CCDS ID:28273.1Re-query CCDS DB by GeneID:110920See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046283.15 ENSMUSP00000048817.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046283.15Link to Ensembl Protein Viewer:ENSMUSP00000048817.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000046283Re-query CCDS DB by Protein ID:ENSMUSP00000048817
Original member Current member NCBI NM_030201.3 NP_084477.1 Accepted alive Link to Nucleotide Sequence:NM_030201.3Link to Protein Sequence:NP_084477.1Re-query CCDS DB by Nucleotide ID:NM_030201Re-query CCDS DB by Protein ID:NP_084477Link to BLAST:NP_084477.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084477.1 471 Q8BM72-1 471 100% 0 0

Chromosomal Locations for CCDS 28273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 75757781 75758448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75759415 75759582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75761096 75761309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75764944 75765284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75766735 75766759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGCCGGAGAGATGACGATCTTAGGTTCAGCTGTTTTGACTCTCCTCTTGGCGGGCTACTTGGCACAAC
AGTATTTACCATTGCCTACGCCAAAAGTGATTGGCATTGACCTGGGTACCACCTACTGTTCGGTTGGTGT
ATTTTTTCCCGGGACAGGAAAAGTGAAGGTGATTCCAGATGAAAACGGGCATATCAGCATCCCCAGCATG
GTGTCCTTCACGGACGGTGATGTGTATGTGGGCTATGAGAGCCTAGAGCTGGCTGATTCAAATCCTCAAA
ACACAATCTATGATGCCAAACGGTTCATCGGGAAGATCTTCACCCCGGAGGAGCTGGAGGCTGAAGTTGG
CAGATACCCATTTAAGGTTTTACACAGAAATGGGATGGCTGAGTTTTCTGTGACAAGTAATGAAACCATC
ATCGTTTCTCCAGAGTTTGTCGGCTCTCGATTGCTGCTGAAGCTAAAGGAGATGGCCGAGGAATACCTCG
GCATGCCGGTTGCCAATGCTGTCATTTCTGTGCCTGCAGAATTCGACCTACAACAGAGAAATTCAACAAT
CCAAGCTGCCAACCTTGCTGGGCTGAAGATCTTGAGGGTGATAAATGAGCCTACAGCAGCAGCGATGGCC
TATGGTCTCCACAAGGTTGACGTGTTCTACGTGTTGGTCATAGACTTGGGTGGAGGAACTCTTGATGTGT
CGTTACTGAATAAACAAGGAGGGATGTTCCTAACACGAGCGATGTCTGGAAACAACAAACTTGGAGGACA
AGACTTCAATCAGAGGCTGCTTCAGCATTTATATAAAGAGATCTATCAAACGTACGGCTTTCTCCCTTCC
AGGAAAGAGGAAATCCACAGATTAAGACAGGCGGTGGAGATGGTCAAGCTAAACTTGACAATTCATCAGT
CTGCCCAGGTATCAGTTTTACTCACTGTGGAGGGGAAGGACAGCAAGGAACCTCAGAATGGTGACTCTGA
ACTGCCAAAAGACCAGCTCACCCCAGGAGATGGTCACCATGTGAATAGAGTGTTTAGACCTGGCCTTTCT
GAAAGCAAGAGTGGAAAAAGTCAGGTTTTGTTTGAGACAGAAGTATCCCGCAAGCTCTTTGATGCCCTCA
ATGAAGATCTCTTTCAGAAAATACTCGTACCCATTCAGCAAGTATTAAAAGAAGGCCTCTTAGACAAGAC
GGAAATTGACGAGGTGGTTCTAGTTGGGGGTTCTACTCGTATTCCTCGGATCCGCCAAGTTATTCAGGAG
TTCTTTGGAAAGGACCCGAATACATCTGTAGACCCTGACCTGGCAGTGGTGACAGGAGTGGCCATCCAAG
CTGGGATTGATGGAGGCTCCTGGCCTCTCCAAGTTAGTGCTTTGGAAATTCCCAATAAGCATTTACAGAA
AACCAACTTCAACTGA

Translation (471 aa):
MAGEMTILGSAVLTLLLAGYLAQQYLPLPTPKVIGIDLGTTYCSVGVFFPGTGKVKVIPDENGHISIPSM
VSFTDGDVYVGYESLELADSNPQNTIYDAKRFIGKIFTPEELEAEVGRYPFKVLHRNGMAEFSVTSNETI
IVSPEFVGSRLLLKLKEMAEEYLGMPVANAVISVPAEFDLQQRNSTIQAANLAGLKILRVINEPTAAAMA
YGLHKVDVFYVLVIDLGGGTLDVSLLNKQGGMFLTRAMSGNNKLGGQDFNQRLLQHLYKEIYQTYGFLPS
RKEEIHRLRQAVEMVKLNLTIHQSAQVSVLLTVEGKDSKEPQNGDSELPKDQLTPGDGHHVNRVFRPGLS
ESKSGKSQVLFETEVSRKLFDALNEDLFQKILVPIQQVLKEGLLDKTEIDEVVLVGGSTRIPRIRQVIQE
FFGKDPNTSVDPDLAVVTGVAIQAGIDGGSWPLQVSALEIPNKHLQKTNFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH