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Report for CCDS28178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28178.1 Public Mus musculus 16 Zbtb20 23 108 98 CCDS HistoryNCBI Gene:56490Re-query CCDS DB by CCDS ID:28178.1Re-query CCDS DB by GeneID:56490See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079441.12 ENSMUSP00000078410.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079441.12Link to Ensembl Protein Viewer:ENSMUSP00000078410.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079441Re-query CCDS DB by Protein ID:ENSMUSP00000078410
Original member Current member EBI ENSMUST00000114694.8 ENSMUSP00000110342.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114694.8Link to Ensembl Protein Viewer:ENSMUSP00000110342.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114694Re-query CCDS DB by Protein ID:ENSMUSP00000110342
Original member Current member EBI ENSMUST00000114695.2 ENSMUSP00000110343.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114695.2Link to Ensembl Protein Viewer:ENSMUSP00000110343.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114695Re-query CCDS DB by Protein ID:ENSMUSP00000110343
Original member Current member NCBI NM_001285805.1 NP_001272734.1 Accepted alive Link to Nucleotide Sequence:NM_001285805.1Link to Protein Sequence:NP_001272734.1Re-query CCDS DB by Nucleotide ID:NM_001285805Re-query CCDS DB by Protein ID:NP_001272734Link to BLAST:NP_001272734.1
Original member Current member NCBI NM_019778.2 NP_062752.2 Accepted alive Link to Nucleotide Sequence:NM_019778.2Link to Protein Sequence:NP_062752.2Re-query CCDS DB by Nucleotide ID:NM_019778Re-query CCDS DB by Protein ID:NP_062752Link to BLAST:NP_062752.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272734.1 741 Q8K0L9-1 741 100% 0 0
NP_062752.2 741 Q8K0L9-1 741 100% 0 0

Chromosomal Locations for CCDS 28178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 43577183 43577193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43577561 43577748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43609327 43610931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43618323 43618744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2226 nt):
ATGCTAGAACGGAAGAAACCCAAGACAGCTGAAAACCAGAAGGCATCTGAGGAGAATGAGATTACTCAGC
CGGGCGGATCCAGCGCCAAGCCGGCCCTTCCCTGCCTGAACTTTGAAGCTGTTTTGTCTCCAGCCCCAGC
CCTCATCCACTCGACACATTCACTGACAAACTCTCACGCTCACACCGGGTCATCTGATTGTGACATCAGT
TGCAAGGGGATGACCGAGCGCATTCACAGCATCAACCTTCACAACTTCAGCAATTCCGTGCTCGAGACCC
TCAACGAGCAGCGCAACCGTGGCCACTTCTGTGACGTGACGGTTCGCATCCACGGGAGCATGCTGCGCGC
ACATCGCTGCGTGCTGGCAGCCGGCAGCCCCTTCTTCCAAGACAAGCTGCTGCTGGGCTACAGCGACATC
GAAATCCCGTCGGTGGTGTCCGTACAATCGGTGCAAAAGCTCATTGACTTCATGTACAGCGGTGTGCTGA
GAGTCTCACAGTCGGAAGCTCTGCAGATCCTCACAGCCGCCAGCATCCTGCAGATCAAAACAGTCATAGA
TGAGTGCACTCGCATCGTGTCACAGAACGTGGGCGATGTGTTCCCAGGCATCCAGGATTCTGGCCAGGAC
ACACCAAGAGGCACACCAGAGTCAGGCACATCTGGCCAGAGCAGTGACACGGAATCAGGCTACCTGCAGA
GCCACCCACAGCATAGTGTGGACCGAATCTACTCCGCACTCTACGCCTGCTCCATGCAGAATGGCAGCGG
CGAGCGCTCCTTCTACAGTGGTGCAGTGGTCAGCCACCACGAAACAGCTCTCGGCCTGCCCCGTGACCAC
CACATGGAAGACCCTAGCTGGATCACACGCATTCATGAGCGCTCCCAGCAAATGGAGCGCTACCTGTCCA
CCACCCCTGAGACCACGCACTGCCGGAAGCAGCCCCGGCCTGTGCGTATCCAGACCCTGGTGGGTAACAT
CCACATCAAGCAGGAAATGGAAGATGACTATGACTACTATGGGCAGCAAAGGGTGCAGATCCTAGAACGC
AATGAATCCGAGGAGTGCACAGAAGACACTGACCAAGCAGAGGGCACTGAGAGCGAGCCCAAAGGTGAAA
GCTTTGATTCTGGGGTCAGCTCCTCCATCGGCACCGAACCTGACTCAGTGGAGCAACAGTTTGGGGCAGC
AGCCCCAAGGGACGGTCAGGCAGAACCCGCCCAACCTGAGCAGGCAGCAGAAGCCCCAGCTGAGAGCAGT
GCCCAGCCAAACCAGCTAGAACCAGGTGCCTCCTCTCCTGAGAGAAGCAACGAGTCAGAGATGGACAACA
CAGTCATCACTGTCAGTAACAGCTCCGATAAGGGCGTCCTACAGCAGCCTTCAGTCAACACATCCATCGG
GCAGCCATTGCCAAGTACCCAGCTCTATTTACGCCAGACAGAAACCCTCACCAGCAACCTGAGGATGCCT
CTGACCTTGACCAGCAACACACAGGTCATTGGCACCGCTGGCAACACCTATCTGCCAGCCCTCTTCACTA
CCCAACCCGCGGGCAGTGGCCCCAAGCCTTTTCTCTTCAGCCTGCCGCAGCCCCTGACAGGCCAGCAGAC
CCAGTTTGTGACAGTGTCCCAGCCCGGTCTGTCCACCTTTACTGCACAGCTGCCAGCGCCACAGCCCCTG
GCCTCATCTGCAGGCCACAGCACAGCCAGTGGGCAAGGCGACAAAAAGCCTTATGAGTGCACTCTCTGCA
ACAAGACTTTCACAGCCAAACAGAACTACGTCAAGCACATGTTCGTACATACAGGTGAGAAGCCCCACCA
GTGCAGCATCTGCTGGCGCTCCTTCTCCTTGAAGGATTACCTTATCAAGCACATGGTGACGCACACCGGC
GTGAGAGCGTACCAGTGTAGCATCTGCAACAAGCGCTTCACCCAGAAGAGTTCCCTCAACGTGCACATGC
GCCTGCACCGCGGGGAGAAGTCCTATGAGTGCTACATCTGCAAAAAGAAGTTCTCCCACAAGACCCTGCT
GGAGCGACACGTGGCCCTGCACAGTGCCAGCAACGGGACCCCTCCGGCAGGCACGCCCCCAGGTGCCCGC
GCGGGTCCGCCAGGCGTGGTGGCCTGCACAGAGGGGACCACTTACGTCTGCTCCGTCTGCCCAGCAAAGT
TTGACCAAATCGAGCAGTTCAACGACCACATGAGGATGCATGTGTCTGACGGATAA

Translation (741 aa):
MLERKKPKTAENQKASEENEITQPGGSSAKPALPCLNFEAVLSPAPALIHSTHSLTNSHAHTGSSDCDIS
CKGMTERIHSINLHNFSNSVLETLNEQRNRGHFCDVTVRIHGSMLRAHRCVLAAGSPFFQDKLLLGYSDI
EIPSVVSVQSVQKLIDFMYSGVLRVSQSEALQILTAASILQIKTVIDECTRIVSQNVGDVFPGIQDSGQD
TPRGTPESGTSGQSSDTESGYLQSHPQHSVDRIYSALYACSMQNGSGERSFYSGAVVSHHETALGLPRDH
HMEDPSWITRIHERSQQMERYLSTTPETTHCRKQPRPVRIQTLVGNIHIKQEMEDDYDYYGQQRVQILER
NESEECTEDTDQAEGTESEPKGESFDSGVSSSIGTEPDSVEQQFGAAAPRDGQAEPAQPEQAAEAPAESS
AQPNQLEPGASSPERSNESEMDNTVITVSNSSDKGVLQQPSVNTSIGQPLPSTQLYLRQTETLTSNLRMP
LTLTSNTQVIGTAGNTYLPALFTTQPAGSGPKPFLFSLPQPLTGQQTQFVTVSQPGLSTFTAQLPAPQPL
ASSAGHSTASGQGDKKPYECTLCNKTFTAKQNYVKHMFVHTGEKPHQCSICWRSFSLKDYLIKHMVTHTG
VRAYQCSICNKRFTQKSSLNVHMRLHRGEKSYECYICKKKFSHKTLLERHVALHSASNGTPPAGTPPGAR
AGPPGVVACTEGTTYVCSVCPAKFDQIEQFNDHMRMHVSDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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