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Report for CCDS28141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28141.1 Public Mus musculus 16 Slc49a4 23 108 98 CCDS HistoryNCBI Gene:224132Re-query CCDS DB by CCDS ID:28141.1Re-query CCDS DB by GeneID:224132See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28141.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023554.8 ENSMUSP00000023554.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023554.8Link to Ensembl Protein Viewer:ENSMUSP00000023554.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023554Re-query CCDS DB by Protein ID:ENSMUSP00000023554
Original member Current member NCBI NM_153550.4 NP_705778.1 Accepted alive Link to Nucleotide Sequence:NM_153550.4Link to Protein Sequence:NP_705778.1Re-query CCDS DB by Nucleotide ID:NM_153550Re-query CCDS DB by Protein ID:NP_705778Link to BLAST:NP_705778.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705778.1 478 Q8BFQ6 478 100% 0 0

Chromosomal Locations for CCDS 28141.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 35697905 35698020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35704754 35704936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35719312 35719439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35722753 35722820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35730286 35730394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35733937 35734066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35735386 35735651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35750496 35750589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35768899 35769241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGGCTCGGGTTGGAGCAGCGAGGAGGAGGAGCGGCAGCCGCTGCTGGGGCCGGGGCTCGGGCCTGCGC
CGGGGGCTGCGCGCAGGGGCCGGGAGGCGACGGCCGTGCTGCCTGCGGCGGGCCCGAACCCCGGGAGGGT
GTACGGGCGCCGCTGGCTGGTGCTGCTGCTCTTCTCGCTCCTCGCGTTCGCCCAGGGCCTGGTCTGGAAC
ACCTGGGGCCCCATCCAGAACTCGGCGCGCCAGGCCTATGGCTTCTCCGGATGGGACATCGCGCTCCTGG
TCCTCTGGGGGCCCATAGGCTTCCTGCCCTGCTTCGCGTTCATGTGGCTGCTGGACAAGAGAGGTCTGCG
GGTCACTGTGCTTCTGACGTCATTTCTTATGGTTTTGGGAACTGGTCTACGATGCATACCTGTATCAGAC
TTAGCCCTTAAGAAAAGGCTAATCCATGGGGGACAGATACTGAACGGACTGGCAGGTCCGACTGTCATGA
ATGCGGCGCCATTCCTCTCTACGACGTGGTTCTCTGCTGACGAGCGAGCCACTGCCACAGCAATCGCATC
AATGCTGAGTTACCTCGGTGGAGCGTGTGCGTTTCTCGTCGGGCCCCTGGTTGTTCCAGCTCCCAACGGG
ACGGCACCCCTTCTCGCTGCGGAGAGTAGCAGGGCTCATATTAAAGACCGAATCGAGACCGTGTTGTATG
CAGAATTTGGAGTTGTCTGCCTAATATTCTCTGCCACGCTAGCTTATTTTCCGCCCCGGCCTCCTCTTCC
TCCCAGTGTCGCTGCTGCGAGCCAGCGGCTGAGTTACCGGCGGAGCTTTTGTAGGTTACTAAGCAATTTG
AGGTTTTTGATGATTGCTTTAGCATACGCAATACCACTTGGTGTGTTTGCTGGCTGGTCTGGAGTTCTGG
ACTTAATTTTAACACCAGTGCATGTCAGTCAAGTAGACGCTGGCTGGATTGGATTCTGGTCCATAGTTGG
AGGCTGTGTTGTTGGGATAGCTATGGCAAGGTTTGCGGATTTTATCCGGGGCATGCTGAAACTGATCCTG
CTCCTCCTGTTTTCTGGGGCTACCCTGTCGTCCACGTGGTTCACCCTGACCTGCCTAAACAGCATCACCC
ACTTGCCTTTGACAACAGTGACATTGTATGCCTCCTGCATCCTCCTGGGAGTGTTCCTGAACAGCAGCGT
CCCCATATTCTTTGAGCTTTTTGTGGAAACGGTCTACCCCGTTCCAGAAGGGATCACCTGTGGAGTTGTC
ACCTTTTTAAGTAATATGTTCATGGGAGTGCTTTTATTTTTTGTCACATTTTATCATACAGAGTTGTCTT
GGTTCAACTGGTGCCTTCCTGGGTCGTGTCTGCTCAGTCTCCTTCTGATTCTGTGCTTCAGGGAATCCTA
TGACAGACTCTACCTTGACGTGGTCGTCTCGGTTTAA

Translation (478 aa):
MGSGWSSEEEERQPLLGPGLGPAPGAARRGREATAVLPAAGPNPGRVYGRRWLVLLLFSLLAFAQGLVWN
TWGPIQNSARQAYGFSGWDIALLVLWGPIGFLPCFAFMWLLDKRGLRVTVLLTSFLMVLGTGLRCIPVSD
LALKKRLIHGGQILNGLAGPTVMNAAPFLSTTWFSADERATATAIASMLSYLGGACAFLVGPLVVPAPNG
TAPLLAAESSRAHIKDRIETVLYAEFGVVCLIFSATLAYFPPRPPLPPSVAAASQRLSYRRSFCRLLSNL
RFLMIALAYAIPLGVFAGWSGVLDLILTPVHVSQVDAGWIGFWSIVGGCVVGIAMARFADFIRGMLKLIL
LLLFSGATLSSTWFTLTCLNSITHLPLTTVTLYASCILLGVFLNSSVPIFFELFVETVYPVPEGITCGVV
TFLSNMFMGVLLFFVTFYHTELSWFNWCLPGSCLLSLLLILCFRESYDRLYLDVVVSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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