NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28099.1 Public Mus musculus 16 Lrrc15 23 108 98 CCDS HistoryNCBI Gene:74488Re-query CCDS DB by CCDS ID:28099.1Re-query CCDS DB by GeneID:74488See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064606.7 ENSMUSP00000066777.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064606.7Link to Ensembl Protein Viewer:ENSMUSP00000066777.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000064606Re-query CCDS DB by Protein ID:ENSMUSP00000066777
Original member Current member NCBI NM_028973.2 NP_083249.1 Accepted alive Link to Nucleotide Sequence:NM_028973.2Link to Protein Sequence:NP_083249.1Re-query CCDS DB by Nucleotide ID:NM_028973Re-query CCDS DB by Protein ID:NP_083249Link to BLAST:NP_083249.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083249.1 579 Q80X72 579 100% 0 0

Chromosomal Locations for CCDS 28099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30272780 30274519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGCCGCTGAAACATTATCTCCTTTTGCTGGTGAGCTGCCAGGCCTGGGCTGCAGGTTTGGCCTACTATG
GCTGCCCCAGCGAATGTACCTGTTCCCGGGCCTCCCAGGTAGAGTGCACAGGGGCACAAATTGTGGCGAT
GCCTTCCCCTCTGCCCTGGAATGCTATGAGCCTGCAGATCCTTAACACACACATCACCGAACTCCCCGAG
GACAAGTTCCTCAACATTTCAGCCCTCATCGCCCTGAAGATGGAGAAGAACGAGCTGGCCAACATCATGC
CAGGTGCCTTCCGCAATCTGGGCTCGCTGCGTCACCTCAGCCTTGCCAACAACAAACTAAAGAACCTGCC
CGTTAGGCTCTTCCAGGATGTGAACAATCTGGAGACCCTCCTGCTGTCCAATAACCAGCTGGTGCAGATC
CAGCCGGCCCAGTTCTCCCAGTTTAGTAATCTTAAGGAACTCCAGTTGTATGGCAACAATCTGGAATACA
TCCCCGAAGGAGTCTTTGACCACCTGGTAGGTCTCACCAAACTCAACCTGGGCAACAACGGCTTCACCCA
CCTATCCCCTAGGGTCTTTCAGCATCTGGGCAACCTCCAGGTGCTTCGGCTATATGAGAACAGGCTTTCA
GACATCCCCATGGGCACTTTTGATGCACTTGGCAACCTCCAGGAGCTGGCCCTCCAAGAGAACCAGATTG
GCACCCTCTCCCCTGGCTTGTTCCACAATAACCGTAACCTCCAGAGACTGTATCTATCCAACAACCACAT
CTCACATCTGCCCCCTGGCATCTTCATGCAGCTGCCCCACCTTAACAAGCTCACACTCTTTGGGAATTCC
CTGAAGGAGCTTTCCCCGGGGGTCTTTGGGCCCATGCCCAACCTGAGGGAGCTTTGGCTCTACAACAATC
ACATTACCTCCCTCCCTGACAATGCCTTCAGCCACCTGAACCAGTTGCAGGTTCTGATTCTTAGTCACAA
CCAGCTCAGTTACATCTCCCCAGGAGCCTTCAATGGGCTGACGAATCTCCGAGAACTGTCCCTCCACACC
AATGCTCTACAGGACCTGGATGGGAATGTCTTCCGATCACTGGCCAACCTGAGGAACGTCTCACTCCAGA
ATAACCGCCTTCGACAGCTCCCTGGCAGCATCTTCGCCAACGTCAATGGTCTCATGACCATCCAACTGCA
GAACAACAATCTAGAGAACTTGCCTCTGGGCATCTTTGATCACTTAGGGAACCTGTGTGAGCTTCGTCTC
TATGACAACCCCTGGAGATGTGACTCAAACATCCTCCCACTTCATGACTGGCTCATTCTCAACAGAGCCA
GGTTGGGGACAGACACTCTTCCAGTGTGTTCCAGTCCAGCCAGTGTCCGAGGCCAGTCCCTTGTCATCAT
CAATGTCAATTTCCCTGGACCCAGTGTCCAGGGCCCAGAAACCCCTGAAGTATCTAGCTACCCAGATACA
TCCAGCTATCCTGACAGCACATCCATTTCTTCTACCACAGAGATCACCAGGTCTACCGATGATGACTACA
CCGATCTAAACACCATCGAACCCATTGATGACCGCAATACATGGGGCATGACTGATGCCCAGAGTGGGCT
GGCCATTGCTGCCATTGTGATTGGCATCATAGCTTTGGCCTGTTCCCTCGCTGCCTGTATCTGCTGCTGC
TGCTGCAAAAAGAGGAGCCAGGCAGTCCTGATGCAGATGAAGGCTCCCAATGAGTGCTAG

Translation (579 aa):
MPLKHYLLLLVSCQAWAAGLAYYGCPSECTCSRASQVECTGAQIVAMPSPLPWNAMSLQILNTHITELPE
DKFLNISALIALKMEKNELANIMPGAFRNLGSLRHLSLANNKLKNLPVRLFQDVNNLETLLLSNNQLVQI
QPAQFSQFSNLKELQLYGNNLEYIPEGVFDHLVGLTKLNLGNNGFTHLSPRVFQHLGNLQVLRLYENRLS
DIPMGTFDALGNLQELALQENQIGTLSPGLFHNNRNLQRLYLSNNHISHLPPGIFMQLPHLNKLTLFGNS
LKELSPGVFGPMPNLRELWLYNNHITSLPDNAFSHLNQLQVLILSHNQLSYISPGAFNGLTNLRELSLHT
NALQDLDGNVFRSLANLRNVSLQNNRLRQLPGSIFANVNGLMTIQLQNNNLENLPLGIFDHLGNLCELRL
YDNPWRCDSNILPLHDWLILNRARLGTDTLPVCSSPASVRGQSLVIINVNFPGPSVQGPETPEVSSYPDT
SSYPDSTSISSTTEITRSTDDDYTDLNTIEPIDDRNTWGMTDAQSGLAIAAIVIGIIALACSLAACICCC
CCKKRSQAVLMQMKAPNEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH