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Report for CCDS28089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28089.1 Public Mus musculus 16 Il1rap 23 108 98 CCDS HistoryNCBI Gene:16180Re-query CCDS DB by CCDS ID:28089.1Re-query CCDS DB by GeneID:16180See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023156.12 ENSMUSP00000023156.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023156.12Link to Ensembl Protein Viewer:ENSMUSP00000023156.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023156Re-query CCDS DB by Protein ID:ENSMUSP00000023156
Original member Current member NCBI NM_008364.2 NP_032390.1 Accepted alive Link to Nucleotide Sequence:NM_008364.2Link to Protein Sequence:NP_032390.1Re-query CCDS DB by Nucleotide ID:NM_008364Re-query CCDS DB by Protein ID:NP_032390Link to BLAST:NP_032390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032390.1 570 Q61730-1 570 100% 0 0

Chromosomal Locations for CCDS 28089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 26624156 26624219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26676709 26676994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26680103 26680289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26692745 26692910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26695222 26695293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26698827 26698953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26701088 26701236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26710481 26710630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26712117 26712260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26714701 26715068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGGACTTCTGTGGTATTTGATGAGTCTGTCCTTCTATGGGATCCTGCAGAGTCATGCTTCGGAGCGCT
GTGATGACTGGGGACTAGATACCATGCGACAAATCCAAGTGTTTGAAGATGAGCCGGCTCGAATCAAGTG
CCCCCTCTTTGAACACTTCCTGAAGTACAACTACAGCACTGCCCATTCCTCTGGCCTTACCCTGATCTGG
TACTGGACCAGGCAAGACCGGGACCTGGAGGAGCCCATTAACTTCCGCCTCCCAGAGAATCGCATCAGTA
AGGAGAAAGATGTGCTCTGGTTCCGGCCCACCCTCCTCAATGACACGGGCAATTACACCTGCATGTTGAG
GAACACAACTTACTGCAGCAAAGTTGCATTTCCCCTGGAAGTTGTTCAGAAGGACAGCTGTTTCAATTCT
GCCATGAGATTCCCAGTGCACAAGATGTATATTGAACATGGCATTCATAAGATCACATGTCCAAATGTAG
ACGGATACTTTCCTTCCAGTGTCAAACCATCGGTCACTTGGTATAAGGGTTGTACTGAAATAGTGGACTT
TCATAATGTACTACCCGAGGGCATGAACTTGAGCTTTTTCATCCCCTTGGTTTCAAATAACGGAAATTAC
ACATGTGTGGTTACATATCCTGAAAACGGACGTCTCTTTCACCTCACCAGGACTGTGACTGTAAAGGTGG
TGGGCTCACCAAAGGATGCATTGCCACCCCAGATCTATTCTCCAAATGACCGTGTTGTCTATGAGAAAGA
ACCAGGAGAGGAACTGGTTATTCCCTGCAAAGTCTATTTCAGTTTCATTATGGACTCCCACAATGAGGTC
TGGTGGACCATTGATGGAAAGAAGCCTGATGACGTCACAGTCGACATCACTATTAATGAAAGTGTAAGTT
ATTCTTCAACGGAAGATGAAACAAGGACTCAGATTTTGAGCATCAAGAAAGTCACCCCGGAGGATCTCAG
GCGCAACTATGTCTGTCATGCTCGAAATACCAAAGGGGAAGCTGAGCAGGCTGCCAAGGTGAAACAGAAA
GTCATACCACCAAGGTACACAGTAGAACTCGCCTGTGGTTTTGGAGCCACGGTCTTTCTGGTAGTGGTTC
TCATTGTGGTTTACCATGTTTACTGGCTGGAGATGGTCCTCTTTTACCGAGCTCACTTTGGAACAGATGA
AACAATTCTTGATGGAAAGGAGTATGATATTTATGTTTCCTATGCAAGAAATGTGGAAGAAGAGGAATTT
GTGCTGCTGACGCTGCGTGGAGTTTTGGAGAATGAGTTTGGATACAAGCTGTGCATCTTCGACAGAGACA
GCCTGCCTGGGGGAATTGTCACAGATGAGACCCTGAGCTTCATTCAGAAAAGCAGACGACTCCTGGTTGT
CCTAAGTCCCAACTACGTGCTCCAGGGAACACAAGCCCTCCTGGAGCTCAAGGCTGGCCTAGAAAATATG
GCCTCCCGGGGCAACATCAACGTCATTTTAGTGCAGTACAAAGCTGTGAAGGACATGAAGGTGAAAGAGC
TGAAGCGGGCTAAGACGGTGCTCACGGTCATTAAATGGAAAGGAGAGAAATCCAAGTATCCTCAGGGCAG
GTTCTGGAAGCAGTTGCAGGTGGCCATGCCAGTGAAGAAGAGTCCCAGGTGGTCTAGCAATGACAAGCAG
GGTCTCTCCTACTCATCCCTGAAAAACGTATGA

Translation (570 aa):
MGLLWYLMSLSFYGILQSHASERCDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKYNYSTAHSSGLTLIW
YWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNS
AMRFPVHKMYIEHGIHKITCPNVDGYFPSSVKPSVTWYKGCTEIVDFHNVLPEGMNLSFFIPLVSNNGNY
TCVVTYPENGRLFHLTRTVTVKVVGSPKDALPPQIYSPNDRVVYEKEPGEELVIPCKVYFSFIMDSHNEV
WWTIDGKKPDDVTVDITINESVSYSSTEDETRTQILSIKKVTPEDLRRNYVCHARNTKGEAEQAAKVKQK
VIPPRYTVELACGFGATVFLVVVLIVVYHVYWLEMVLFYRAHFGTDETILDGKEYDIYVSYARNVEEEEF
VLLTLRGVLENEFGYKLCIFDRDSLPGGIVTDETLSFIQKSRRLLVVLSPNYVLQGTQALLELKAGLENM
ASRGNINVILVQYKAVKDMKVKELKRAKTVLTVIKWKGEKSKYPQGRFWKQLQVAMPVKKSPRWSSNDKQ
GLSYSSLKNV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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