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Report for CCDS28019.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28019.1 Public Mus musculus 16 Tango2 23 108 98 CCDS HistoryNCBI Gene:27883Re-query CCDS DB by CCDS ID:28019.1Re-query CCDS DB by GeneID:27883See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28019.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115628.9 ENSMUSP00000111291.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115628.9Link to Ensembl Protein Viewer:ENSMUSP00000111291.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115628Re-query CCDS DB by Protein ID:ENSMUSP00000111291
Original member Current member NCBI NM_001359108.1 NP_001346037.1 Accepted alive Link to Nucleotide Sequence:NM_001359108.1Link to Protein Sequence:NP_001346037.1Re-query CCDS DB by Nucleotide ID:NM_001359108Re-query CCDS DB by Protein ID:NP_001346037Link to BLAST:NP_001346037.1
Original member Current member NCBI NM_001359109.1 NP_001346038.1 Accepted alive Link to Nucleotide Sequence:NM_001359109.1Link to Protein Sequence:NP_001346038.1Re-query CCDS DB by Nucleotide ID:NM_001359109Re-query CCDS DB by Protein ID:NP_001346038Link to BLAST:NP_001346038.1
Original member Current member NCBI NM_138583.2 NP_613049.2 Accepted alive Link to Nucleotide Sequence:NM_138583.2Link to Protein Sequence:NP_613049.2Re-query CCDS DB by Nucleotide ID:NM_138583Re-query CCDS DB by Protein ID:NP_613049Link to BLAST:NP_613049.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346037.1 276 P54797 276 100% 0 0
NP_001346038.1 276 P54797 276 100% 0 0
NP_613049.2 276 P54797 276 100% 0 0

Chromosomal Locations for CCDS 28019.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18301432 18301552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18302686 18302790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18303683 18303836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18307970 18308040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18310869 18310983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18312639 18312758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18316646 18316734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18324357 18324412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGTGCATCATCTTCTTTAAGTTTGATCCTCGTCCTGTTTCCAAAAATGCATACAGGCTCATCTTGGCAG
CCAACAGAGATGAATTCTATAACAGGCCGTCCAAGTTGGCAGACTTCTGGGGGAACAACAGTGAGATCCT
CAGTGGGCTCGACATGGAGGAAGGCAAGGCAGGAGGAACATGGCTGGGCATCAGCACACGTGGGAAGCTG
GGGGCACTCACCAACTACCTACAGCCCCGGCAAGAGCCAGACGCCCGTGGTAGAGGTGAACTTGTGTCTC
ACTTTCTGACCAGTGACATGGACAGCCTGTCCTACCTGAAGAAGGTCTCTACAGAGGGCCACCTGTATAA
CGGCTTTAACATCATAGCAGCTGACCTGAGCACGTCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGG
GGGGAGCCTGAGCCTATTGTCTTGACACCAGGAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCT
GGAAGAAGCTGTGCTTTGGCAAACAACTCTTCATGGAAGCAGTGGAGCAGAGCGAAGCACTCCCTAAGGA
CGTCCTTGTCACTCAGCTCCTAGATGTCCTCAACAATGAGGAGGCACAGCTGCCAGACCCAGCCATTGAG
GACCAGGGCCAGGAGTATGTACAGCCAATTCTGAACAAGTATGCAGCTGTGTGTGTCCGCTGTGCCACCT
ATGGCACCAGAACCAACACCATCATCCTTGTGGATGCAAATGGCCACGTGACCTTCACTGAACGGAGCAT
GCTGGACAAAGACACCTCTCGCTGGGAGACCAACACCTATGAGTTCACACTACAGAGTTAG

Translation (276 aa):
MCIIFFKFDPRPVSKNAYRLILAANRDEFYNRPSKLADFWGNNSEILSGLDMEEGKAGGTWLGISTRGKL
GALTNYLQPRQEPDARGRGELVSHFLTSDMDSLSYLKKVSTEGHLYNGFNIIAADLSTSKGDVVCYYGNR
GEPEPIVLTPGTYGLSNALLETPWKKLCFGKQLFMEAVEQSEALPKDVLVTQLLDVLNNEEAQLPDPAIE
DQGQEYVQPILNKYAAVCVRCATYGTRTNTIILVDANGHVTFTERSMLDKDTSRWETNTYEFTLQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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