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Report for CCDS27939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27939.1 Public Mus musculus 16 Abat 23 108 98 CCDS HistoryNCBI Gene:268860Re-query CCDS DB by CCDS ID:27939.1Re-query CCDS DB by GeneID:268860See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27939.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065987.13 ENSMUSP00000063548.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065987.13Link to Ensembl Protein Viewer:ENSMUSP00000063548.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065987Re-query CCDS DB by Protein ID:ENSMUSP00000063548
Original member Current member NCBI NM_172961.3 NP_766549.2 Accepted alive Link to Nucleotide Sequence:NM_172961.3Link to Protein Sequence:NP_766549.2Re-query CCDS DB by Nucleotide ID:NM_172961Re-query CCDS DB by Protein ID:NP_766549Link to BLAST:NP_766549.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766549.2 500 P61922-1 500 100% 0 0

Chromosomal Locations for CCDS 27939.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 8572881 8572950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8578231 8578328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8581899 8581928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8582737 8582854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8588886 8588935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8600910 8600990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8602286 8602378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8603470 8603532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8603689 8603752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8605512 8605660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8608856 8608993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8611127 8611294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8613983 8614129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8615890 8616001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8618505 8618626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGCCTTCTTGTTGATTACCCGACGGCTGGCCTGCAGTTCCCAGAAAAACCTCCACCTCTTCATACCTG
GATCCAGATATATCAGCCAAGCCGCTGCCAAAGTTGACATTGAATTTGATTATGATGGACCACTCATGAA
GACGGAAGTCCCGGGGCCTAGATCTAAGGAACTAATGAAACAGCTGAACACAATCCAGAATGCAGAGGCC
GTGCACTTTTTCTGCAACTATGAAGAGAGCAGAGGTAACTACCTAGTGGACGTGGACGGCAACCGCATGT
TGGACCTGTATTCTCAGATCTCCTCTGTGCCCATAGGTTACAACCATCCGGCTCTGGCGAAACTCGTTCA
ACAGCCTCAGAACGCGAGCACTTTCATCAACAGACCTGCCTTGGGCATCCTGCCTCCAGAGAACTTTGTG
GACAAGCTCCAGGAGTCCTTGATGTCGGTGGCGCCCAGGGGCATGTCCCAGCTCATCACCATGGCCTGTG
GCTCCTGCTCCAATGAGAATGCATTCAAGACCATCTTCATGTGGTACCGGAGTAAGGAACGAGGGCAGAG
AGGTTTCTCCAAAGAGGAGCTGGAGACTTGCATGGTTAACCAGAGTCCTGGATGCCCAGACTACAGCATT
CTCTCCTTCATGGGTGCTTTCCATGGGAGGACCATGGGTTGCTTAGCGACCACACACTCCAAAGCAATTC
ACAAGATTGACATCCCTTCCTTTGACTGGCCCATTGCTCCATTCCCACGGCTGAAATATCCCCTGGAGGA
GTTTACAACGGACAACCAGCAAGAGGAGGCCCGCTGCCTAGAAGAGGTGGAGGATTTAATTGTGAAATAT
CGGAAAAAGAAGAGAACGGTGGCTGGAATCATCGTGGAGCCCATCCAGTCCGAGGGTGGAGACAACCATG
CATCAGATGACTTCTTCCGGAAGCTGAGAGACATAGCCAGGAAGCATGGCTGTGCCTTCTTGGTGGACGA
GGTGCAGACCGGAGGAGGCTGTACAGGCAAGTTCTGGGCCCATGAACACTGGGGCTTGGATGACCCAGCC
GATGTGATGACGTTCAGCAAGAAAATGATGACCGGGGGCTTCTTCCACAAGGAGGAGTTTCGGCCAAGTG
CTCCTTACCGGATTTTCAATACCTGGCTGGGGGACCCATCCAAGAACTTGCTGCTGGCTGAGGTCATCAA
CATCATCAAGCGGGAAGACCTGCTCAACAATGTGGCCCGTGTGGGGAAGACCCTACTCACAGGGCTGCTG
GACCTCCAGGCCCAGTACCCTCAGTTCATCAGCAGAGTGAGGGGACGAGGCACCTTCTGTTCCTTCGACA
CTCCCGATGAAGCCATACGGAATAAACTCATCCTAATTGCCAGGAACAAAGGTGTGGTACTGGGGGGCTG
CGGTGACAAGTCCATCCGTTTCCGCCCCACGCTGGTCTTCAGGGATCACCACGCCCATCTGTTCCTCAGC
ATTTTCAGCGGCATCTTAGCAGACTTCAAGTAA

Translation (500 aa):
MAFLLITRRLACSSQKNLHLFIPGSRYISQAAAKVDIEFDYDGPLMKTEVPGPRSKELMKQLNTIQNAEA
VHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYNHPALAKLVQQPQNASTFINRPALGILPPENFV
DKLQESLMSVAPRGMSQLITMACGSCSNENAFKTIFMWYRSKERGQRGFSKEELETCMVNQSPGCPDYSI
LSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFTTDNQQEEARCLEEVEDLIVKY
RKKKRTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPA
DVMTFSKKMMTGGFFHKEEFRPSAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNVARVGKTLLTGLL
DLQAQYPQFISRVRGRGTFCSFDTPDEAIRNKLILIARNKGVVLGGCGDKSIRFRPTLVFRDHHAHLFLS
IFSGILADFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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