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Report for CCDS27936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27936.1 Public Mus musculus 16 Rbfox1 23 108 98 CCDS HistoryNCBI Gene:268859Re-query CCDS DB by CCDS ID:27936.1Re-query CCDS DB by GeneID:268859See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000229741.1 ENSMUSP00000155364.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229741.1Link to Ensembl Protein Viewer:ENSMUSP00000155364.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229741Re-query CCDS DB by Protein ID:ENSMUSP00000155364
Original member NCBI NM_183188.2 NP_899011.2 Updated not alive Link to Nucleotide Sequence:NM_183188.2Link to Protein Sequence:NP_899011.2Re-query CCDS DB by Nucleotide ID:NM_183188Re-query CCDS DB by Protein ID:NP_899011
Current member NCBI NM_183188.3 NP_899011.2 Accepted alive Link to Nucleotide Sequence:NM_183188.3Link to Protein Sequence:NP_899011.2Re-query CCDS DB by Nucleotide ID:NM_183188Re-query CCDS DB by Protein ID:NP_899011Link to BLAST:NP_899011.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899011.2 417 Q9JJ43-3 417 100% 0 0

Chromosomal Locations for CCDS 27936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 7069999 7070085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7224311 7224550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7277025 7277168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7285478 7285531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7292185 7292277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7294070 7294130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7306408 7306461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7330362 7330442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7352932 7353064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7369801 7369843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7375905 7375969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7407964 7408039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 7409691 7409813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGTTGGCGTCGCAAGGAGTCCTTCTGCATTCTTATGGCGTGCCCATGATTGTGCCTGCTGCCCCCTACT
TCCCGGGACTGATGCAGGGTAATCAGGAAGCAGCCGCCGCCCCTGACACAATGGCTCAGCCTTATGCCTC
AGCGCAGTTCGCACCACCCCAGAATGGCATCCCTGCAGAATACACGGCCCCTCATCCTCATCCCGCGCCA
GAGTACACCGGCCAGACCACTGTCCCTGACCACACATTAAACCTGTATCCTCCTACACAGACGCACTCGG
AGCAGAGTGCTGACACCAGTGCGCAGACCGTCTCCGGCACCGCCACACAGACAGATGATGCAGCCCCGAC
CGACGGCCAGCCCCAGACACAACCTTCTGAAAACACAGAAAGCAAGTCCCAGCCCAAGCGGCTGCATGTG
TCCAACATCCCTTTCCGGTTCCGGGATCCAGACCTCCGACAAATGTTTGGTCAATTTGGTAAAATATTAG
ATGTTGAAATTATTTTTAATGAGCGAGGCTCCAAGGGATTTGGTTTCGTAACTTTCGAAAATAGTGCGGA
TGCGGACAGGGCGAGGGAGAAATTGCACGGTACCGTGGTAGAGGGCCGTAAAATCGAGGTTAATAATGCG
ACAGCACGCGTGATGACAAATAAGAAGACTGTCAACCCCTACACCAATGGCTGGAAATTAAATCCAGTTG
TGGGCGCGGTCTACAGCCCCGACTTCTATGCAGGCACGGTGCTGTTGTGCCAGGCCAACCAGGAGGGATC
TTCCATGTACAGTGGCCCCAGTTCACTTGTATATACTTCTGCAATGCCTGGCTTCCCATATCCGGCCGCC
ACTGCTGCAGCTGCATACCGAGGGGCTCACCTTCGAGGCCGTGGTCGCACCGTGTACAACACCTTCAGGG
CTGCAGCGCCCCCGCCCCCAATCCCGGCCTATGGCGGAGTAGTGTATCAAGAGCCAGTGTATGGCAATAA
ATTGCTACAGGGTGGTTATGCTGCGTACCGCTATGCCCAGCCCACCCCTGCCACTGCCGCTGCCTACAGT
GACAGTTACGGACGAGTTTATGCTGCCGACCCCTACCACCACACACTTGCTCCAGCCCCCACCTACGGCG
TTGGTGCCATGAATGCTTTTGCGCCCTTGACCGATGCCAAGACTAGGAGCCATGCTGATGATGTGGGTCT
CGTTCTTTCTTCATTGCAGGCTAGTATATACCGAGGGGGATACAACCGTTTTGCTCCATATTAA

Translation (417 aa):
MLASQGVLLHSYGVPMIVPAAPYFPGLMQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAP
EYTGQTTVPDHTLNLYPPTQTHSEQSADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTESKSQPKRLHV
SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA
TARVMTNKKTVNPYTNGWKLNPVVGAVYSPDFYAGTVLLCQANQEGSSMYSGPSSLVYTSAMPGFPYPAA
TAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYS
DSYGRVYAADPYHHTLAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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