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Report for CCDS27867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27867.1 Public Mus musculus 15 Krt79 23 108 98 CCDS HistoryNCBI Gene:223917Re-query CCDS DB by CCDS ID:27867.1Re-query CCDS DB by GeneID:223917See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27867.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023799.7 ENSMUSP00000023799.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023799.7Link to Ensembl Protein Viewer:ENSMUSP00000023799.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023799Re-query CCDS DB by Protein ID:ENSMUSP00000023799
Original member Current member NCBI NM_146063.1 NP_666175.1 Accepted alive Link to Nucleotide Sequence:NM_146063.1Link to Protein Sequence:NP_666175.1Re-query CCDS DB by Nucleotide ID:NM_146063Re-query CCDS DB by Protein ID:NP_666175Link to BLAST:NP_666175.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666175.1 531 Q8VED5 531 100% 0 0

Chromosomal Locations for CCDS 27867.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101929723 101929928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101930168 101930202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101930678 101930898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101931425 101931550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101931752 101931916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101936105 101936200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101936301 101936361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101937826 101938043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101939747 101940214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGCGGTCCTCTTTGTCCAGGCAGACTTTCTCCACTAAAGGAGGCTTCAGCTCTAACTCAGCCAGCGGAG
GTGGTGGGAGTCGGATGCGAACCAGCTACAGCTCAGTGACTATGTCCAGGGGGAGCGGCGGTGGCGGTGG
GGTCCGCTCTGGGTCCAGCTCCGGGGGCTTTGGCAGCCGGAGCCTCTACAACTTGGGAGGCAAGAATATC
TCCGTCAGCATGGCTTGTGGGGCCTCCTCTGGCCGGGCACTAGGAGGCTTTGGCAGTGGGGCCTATGTGG
GCCTAGGGGCTAGCAGGCAGACATTTGGGCCAGTCTGTCCTCCCGGGGGCATCCAGGAAGTCACTGTCAA
CCAGAGCCTGCTGACGCCTCTCAATGTGGAGATAGACCCCGAGATTCAGCGGGTGCGCACCCAGGAGCGC
GAGCAGATCAAGACCCTCAACAACAAGTTTGCCTCCTTTATTGATAAGGTACGCTTCCTGGAACAACAGA
ACAAGGTGCTGGAGACGAAGTGGGCGCTGCTGCAGGAGCAGAGCCAGAACACGGGGGTCGCCAGGAGCCT
GGAGCCTTTCTTTGAGAATTACCTGAGCACCCTGAGGAGGCAGCTGGATACCAAACAGAGCGAGCGGGGC
CGGCTGGATATGGAGCTGAGGAACGTACAGGATAATCTGGAGGACTTCAAGAACAAGTATGAGGATGAAA
TCAACAAACGCACTGCCCTGGAGAATGAGTTTGTGCTGCTCAAGAAGGATGTAGATGCCGCATACATGGG
CAGAATGGATCTGCATGGCAAAGTGGACAGCTTGACACAAGAGATTGACTTCCTGCAACAGCTCTTTGAG
ATGGAGCTGAGCCAAGTGCAGACCAATGTGTCTGACACCAACGTGATACTGTCCATGGACAACAACCGCA
ACCTGGACTTGGACAGCATCATCGCTGAAGTCAAAGCCCAGTATGAGCTGATCGCCCAGAAGAGTCGGGC
TGAGGCTGAGTCCTGGTACCAGACCAAATATGAAGAACTGCAGGTGACAGCTGGGAAGCACGGGGACAGC
CTTCGAGACACTAAAAATGAGATCGCAGAACTCACTCGCACCACTCAGAGACTGCAGGGCGAGGTGGATG
CAGCCAAGAAGCAGTGCCAGCAGCTGCAGACAGCCATCGCAGAAGCAGAGCAGAATGGGGAGATGGCGCT
CAAGGACGCTAAGAAGAAGCTTGGAGATCTAGACACAGCCCTGCATCAGGCCAAGGAGGACCTGGCCCGG
ATGCTGCGTGAATACCAGGATCTTGTGAGCGTCAAGCTGGCCCTGGATATGGAGATCGCCACCTACCGCA
AGCTGCTGGAGAGCGAGGAGAGCAGGATGTCTGGAGATTGTCCCAGCGCAATCAGCATCTCGGTGACCGG
CAACTCTACCTCCGTTTGCGCAGGCGGCACGGCTGGCTTCGGGAACGGCCTCTCTCTGGGCGGGGCTGGC
GGGGCCAGCAAGGGCGGCTTTGGTTCTAGTGTGAGCTATGGCGCTGCCAAAGGCGGTCAGGTCTCTGGGG
GAACCTCCATCCTACGGAAGACCACTACAGTCAAGACCTCTAGCCGGAGATACTAG

Translation (531 aa):
MRSSLSRQTFSTKGGFSSNSASGGGGSRMRTSYSSVTMSRGSGGGGGVRSGSSSGGFGSRSLYNLGGKNI
SVSMACGASSGRALGGFGSGAYVGLGASRQTFGPVCPPGGIQEVTVNQSLLTPLNVEIDPEIQRVRTQER
EQIKTLNNKFASFIDKVRFLEQQNKVLETKWALLQEQSQNTGVARSLEPFFENYLSTLRRQLDTKQSERG
RLDMELRNVQDNLEDFKNKYEDEINKRTALENEFVLLKKDVDAAYMGRMDLHGKVDSLTQEIDFLQQLFE
MELSQVQTNVSDTNVILSMDNNRNLDLDSIIAEVKAQYELIAQKSRAEAESWYQTKYEELQVTAGKHGDS
LRDTKNEIAELTRTTQRLQGEVDAAKKQCQQLQTAIAEAEQNGEMALKDAKKKLGDLDTALHQAKEDLAR
MLREYQDLVSVKLALDMEIATYRKLLESEESRMSGDCPSAISISVTGNSTSVCAGGTAGFGNGLSLGGAG
GASKGGFGSSVSYGAAKGGQVSGGTSILRKTTTVKTSSRRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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