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Report for CCDS2776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2776.1 Public Homo sapiens 3 NCKIPSD 24 110 108 CCDS HistoryNCBI Gene:51517Re-query CCDS DB by CCDS ID:2776.1Re-query CCDS DB by GeneID:51517See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2776.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294129.7 ENSP00000294129.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294129.7Link to Ensembl Protein Viewer:ENSP00000294129.2Re-query CCDS DB by Nucleotide ID:ENST00000294129Re-query CCDS DB by Protein ID:ENSP00000294129
Original member Current member NCBI NM_016453.4 NP_057537.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016453.4Link to Protein Sequence:NP_057537.1Re-query CCDS DB by Nucleotide ID:NM_016453Re-query CCDS DB by Protein ID:NP_057537Link to BLAST:NP_057537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057537.1 722 Q9NZQ3-1 722 100% 0 0

Chromosomal Locations for CCDS 2776.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 48674544 48674747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48678564 48678736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48678877 48678969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48679055 48679183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48679377 48679457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48679575 48679713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48679801 48679887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48680059 48680229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48681287 48681780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48682045 48682156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48682348 48682552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48682903 48683012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48685637 48685807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGTACCGCGCGCTGTACGCGTTCCGCTCGGCGGAGCCCAACGCGCTGGCGTTCGCCGCGGGCGAGACCT
TCCTGGTGCTAGAGCGAAGCAGCGCGCACTGGTGGCTGGCCGCGCGGGCGCGCAGTGGTGAGACGGGCTA
CGTGCCGCCAGCCTACCTGCGCCGCCTGCAGGGCCTGGAGCAGGATGTCCTCCAGGCCATTGACCGGGCC
ATCGAGGCTGTACACAACACAGCCATGCGGGATGGTGGCAAGTACAGCCTGGAACAGCGTGGAGTCCTCC
AGAAGCTGATCCACCACCGGAAAGAGACCCTGTCACGCAGAGGCCCTTCAGCCTCCAGTGTTGCAGTTAT
GACCTCATCAACCAGTGACCACCACTTGGATGCTGCTGCAGCCAGGCAGCCCAATGGGGTGTGTCGAGCT
GGGTTCGAGCGGCAGCACAGCCTACCCAGTTCTGAGCATCTTGGGGCAGATGGAGGCCTCTACCAGATCC
CACTTCCATCTTCCCAGATCCCACCACAGCCTCGCCGAGCAGCACCCACCACACCGCCCCCACCAGTGAA
GCGCCGAGACCGCGAGGCCCTGATGGCCTCTGGGAGTGGTGGCCACAACACCATGCCCTCCGGGGGTAAC
TCTGTGTCCAGCGGCTCCTCAGTCAGCAGCACCTCCCTGGACACGCTCTATACCAGCTCCAGCCCATCTG
AACCAGGCTCCAGCTGCTCACCCACACCCCCACCTGTGCCCCGCCGAGGCACCCACACCACCGTGTCCCA
AGTCCAGCCCCCTCCCTCCAAGGCATCAGCACCTGAACCCCCTGCAGAAGAAGAAGTGGCAACTGGTACA
ACCTCAGCCTCTGATGACCTGGAAGCCCTGGGTACACTGAGCCTGGGGACCACAGAGGAGAAGGCAGCAG
CTGAGGCGGCTGTGCCCAGGACCATTGGGGCCGAGCTGATGGAGCTGGTGCGGAGAAACACTGGCCTGAG
CCACGAATTATGCCGGGTGGCCATCGGCATCATAGTGGGTCACATCCAGGCCTCGGTGCCGGCCAGCTCA
CCAGTCATGGAGCAGGTCCTCCTCTCACTCGTAGAGGGCAAGGACCTCAGCATGGCCCTGCCCTCAGGGC
AGGTCTGCCACGACCAGCAGAGGCTGGAGGTGATCTTTGCAGACCTGGCTCGCCGGAAGGACGACGCCCA
GCAGCGCAGTTGGGCACTATATGAGGATGAGGGTGTCATCCGCTGCTACCTAGAGGAGCTGCTGCATATT
CTGACTGATGCAGACCCTGAAGTTTGCAAGAAAATGTGCAAGAGAAACGAGTTCGAGTCTGTCCTGGCCT
TGGTGGCCTATTACCAAATGGAACACCGAGCATCACTGCGGCTGCTGCTCCTCAAGTGCTTTGGCGCCAT
GTGCAGCCTGGATGCAGCCATCATCTCCACGCTTGTGTCATCCGTGCTGCCTGTAGAGCTGGCGAGGGAC
ATGCAGACAGACACGCAGGACCACCAGAAACTCTGTTACTCTGCCCTCATCCTGGCCATGGTCTTCTCCA
TGGGAGAGGCAGTGCCCTATGCACACTATGAGCACCTGGGCACGCCTTTCGCCCAGTTCCTACTGAACAT
CGTCGAGGATGGGCTGCCCTTGGACACCACAGAGCAGCTGCCGGACCTCTGCGTGAACCTGCTTCTGGCT
CTCAACCTGCACCTGCCAGCTGCTGACCAGAATGTCATCATGGCTGCCCTGAGCAAACACGCCAATGTCA
AGATCTTCTCCGAGAAGCTGTTGTTGCTCCTGAACAGAGGGGATGACCCTGTGCGCATCTTCAAACATGA
GCCACAGCCACCACACTCTGTCCTCAAGTTCCTGCAGGACGTGTTTGGCAGCCCGGCCACAGCTGCCATC
TTCTACCACACAGACATGATGGCTCTCATTGACATCACTGTGCGGCACATCGCAGACCTGTCACCAGGAG
ACAAGCTGCGCATGGAGTACCTCTCCCTGATGCATGCTATAGTCCGCACCACACCCTACCTGCAGCACCG
CCACCGGCTACCCGACCTGCAGGCCATACTGCGACGCATCCTGAATGAGGAGGAGACCTCACCCCAGTGC
CAGATGGACCGCATGATTGTCCGAGAGATGTGCAAGGAATTCCTGGTGCTGGGGGAGGCTCCCAGCTAG

Translation (722 aa):
MYRALYAFRSAEPNALAFAAGETFLVLERSSAHWWLAARARSGETGYVPPAYLRRLQGLEQDVLQAIDRA
IEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSVAVMTSSTSDHHLDAAAARQPNGVCRA
GFERQHSLPSSEHLGADGGLYQIPLPSSQIPPQPRRAAPTTPPPPVKRRDREALMASGSGGHNTMPSGGN
SVSSGSSVSSTSLDTLYTSSSPSEPGSSCSPTPPPVPRRGTHTTVSQVQPPPSKASAPEPPAEEEVATGT
TSASDDLEALGTLSLGTTEEKAAAEAAVPRTIGAELMELVRRNTGLSHELCRVAIGIIVGHIQASVPASS
PVMEQVLLSLVEGKDLSMALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHI
LTDADPEVCKKMCKRNEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARD
MQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLNIVEDGLPLDTTEQLPDLCVNLLLA
LNLHLPAADQNVIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATAAI
FYHTDMMALIDITVRHIADLSPGDKLRMEYLSLMHAIVRTTPYLQHRHRLPDLQAILRRILNEEETSPQC
QMDRMIVREMCKEFLVLGEAPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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