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Report for CCDS27711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27711.1 Public Mus musculus 15 Prr5 23 108 98 CCDS HistoryNCBI Gene:109270Re-query CCDS DB by CCDS ID:27711.1Re-query CCDS DB by GeneID:109270See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27711.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065499.4 ENSMUSP00000066396.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065499.4Link to Ensembl Protein Viewer:ENSMUSP00000066396.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000065499Re-query CCDS DB by Protein ID:ENSMUSP00000066396
Original member Current member NCBI NM_146061.4 NP_666173.4 Accepted alive Link to Nucleotide Sequence:NM_146061.4Link to Protein Sequence:NP_666173.4Re-query CCDS DB by Nucleotide ID:NM_146061Re-query CCDS DB by Protein ID:NP_666173Link to BLAST:NP_666173.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666173.4 387 Q812A5-1 387 100% 0 0

Chromosomal Locations for CCDS 27711.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 84681183 84681319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84687903 84687983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84693464 84693512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84693759 84693816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84699121 84699212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84699591 84699731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84701364 84701499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84702718 84703187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGAGGACTCTCCGCAGGTTGAAGTTCATGAGTTCGCCCAGCCTCAGTGACCTGGGCAAGAGGGAGCCGG
GCGCGGCGGGTACGGACGAGCGGGGCACGCAGCAGCGCCGGGCCTGCGCCAACGCCACCTGGAACAGTAT
CCATAACGGAGTGATCGCGGTCTTCCAGCGCAAGGGGCTGCCCGACCAGGAGCTCTTCATCCTCAACGAG
GGCGTCCGGCAGCTGCTGAAGACGGAGCTGGGGTCCTTCTTCACTGAGTACCTGCAGAACCAGCTGCTCA
CGAAGGGCATGGTGATTCTTCGTGACAAGATTCGCTTCTACGAAGGACAGAAGCTGCTGGACTCATTGGC
GGAGACCTGGGATTTCTTCTTCAGTGATGTGCTGCCAACCCTGCAGGCCATCTTCTATCCTGTGCAGGGC
AAGGAGCCGTCGGTGCGCCAGCTCGCCCTGCTGCATTTCCGGAACACCATCACCCTCAGCGTGAAGCTGG
AGGACGCGCTGGCCCGCTCTCACGCGCGTGTTCCCCCTGCCATCGCACAGATGCTGCTGGTACTGCAGGG
GGTACATGAGTCCAGGGGTGTGACTGAAGACTATCTGCGCCTCGAGACACTGATTCAGAAGGTGGTGTCG
CCGTACCTGGGCACCTATGGTCTCTATTCCAATGAAGGACCTTGTACCCATTCCTGTATCCTCGAGAAAC
GATTCCTACGCCGCTCCCGCTCTGGGGATATCCTAGCCAAGAACCCAGTGGTGCGCTCCAAAAGCTACAA
CACTCCCCTGCTCAATCCTGTGGCCGAGCATGAAGCAGAAGGCACAGCAGCCAGCGGCACGAGCATCCGC
AGACACTCAGTCTCCGAGATGACATCTTGTCCGGAGCCCCAGGGCTTTGTGGACACGCCTGGCCAGGGCC
CTTCGGGGACCTTCCGGTCTTCTCCAACACCCCACTCAGGGCCTTGCCCCAGCAGACTATACCCCCCTGC
CCATTCCCCGGAACAGGGCCCAGGCCATGGCTCCCCATCCACCTCCAGCCCAGAGACTCTTGTGGACCAG
ATCCTGGAGTCCGCGGACTCAGACTCGGAAGGGATATTCATTGACTTTGGGCGGGGAAGTCGCTCCAGTG
TGTCTGACTTTGAGGCACCGGGAGGCCGGCCAAGTGTTGTGTGA

Translation (387 aa):
MRTLRRLKFMSSPSLSDLGKREPGAAGTDERGTQQRRACANATWNSIHNGVIAVFQRKGLPDQELFILNE
GVRQLLKTELGSFFTEYLQNQLLTKGMVILRDKIRFYEGQKLLDSLAETWDFFFSDVLPTLQAIFYPVQG
KEPSVRQLALLHFRNTITLSVKLEDALARSHARVPPAIAQMLLVLQGVHESRGVTEDYLRLETLIQKVVS
PYLGTYGLYSNEGPCTHSCILEKRFLRRSRSGDILAKNPVVRSKSYNTPLLNPVAEHEAEGTAASGTSIR
RHSVSEMTSCPEPQGFVDTPGQGPSGTFRSSPTPHSGPCPSRLYPPAHSPEQGPGHGSPSTSSPETLVDQ
ILESADSDSEGIFIDFGRGSRSSVSDFEAPGGRPSVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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