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Report for CCDS27610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27610.1 Public Mus musculus 15 Ncf4 23 108 98 CCDS HistoryNCBI Gene:17972Re-query CCDS DB by CCDS ID:27610.1Re-query CCDS DB by GeneID:17972See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27610.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096357.11 ENSMUSP00000094084.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096357.11Link to Ensembl Protein Viewer:ENSMUSP00000094084.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000096357Re-query CCDS DB by Protein ID:ENSMUSP00000094084
Original member NCBI NM_008677.2 NP_032703.2 Updated not alive Link to Nucleotide Sequence:NM_008677.2Link to Protein Sequence:NP_032703.2Re-query CCDS DB by Nucleotide ID:NM_008677Re-query CCDS DB by Protein ID:NP_032703
Current member NCBI NM_008677.3 NP_032703.2 Accepted alive Link to Nucleotide Sequence:NM_008677.3Link to Protein Sequence:NP_032703.2Re-query CCDS DB by Nucleotide ID:NM_008677Re-query CCDS DB by Protein ID:NP_032703Link to BLAST:NP_032703.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032703.2 339 P97369 339 100% 0 0

Chromosomal Locations for CCDS 27610.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78245056 78245087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78250382 78250466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78250862 78251015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78253297 78253367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78254787 78254914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78255452 78255509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78255931 78256029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78260624 78260754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78260972 78261037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78262196 78262391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGCCCTGGCCCAGCAGCTGCGATCAGAGAGCGACTTTGAGCAGCTTCCAGACGATGTGGCCGTCTCAG
CCAACATCGCTGACATCGAGGAGAAGAGGGGCTTCACCAGCCACTTTGTTTTTGTCATCGAGGTCAAAAC
AAAAGGAGGGTCCAAGTATCTCATCTACCGCCGCTATCGCCAGTTCTACGCCCTGCAGAGCAAGCTGGAG
GAGCGGTTTGGGCCAGAGAGCAAGAACAGCCCTTTCACCTGCAGCCTGCCCACATTGCCAGCCAAAGTCT
ACATGGGCGCAAAACAAGAGATCGCTGAGACTCGGATCCCGGCCCTCAATGCCTACATGAAGAACCTCCT
GAGCCTGCCGGTCTGCGTGCTGATGGACCCCGACGTCAGGATCTTCTTCTATCAGTCTGCATACGATGCT
GAGCAGGTGCCCCAGGCACTCCGCAGGCTCCGACCGCGCACGCGCAAAATCAAGGGTGTGTCTCCACAAG
GGGCCATCATGGATCGCATGGAAGCGCCAAGAGCAGAGGCCTTGTTTGACTTCACTGGGAACAGCAAATT
GGAGCTAAGTTTCAAAGCTGGAGATGTGATCTTCCTTCTCAGTAAGATCAACAAAGACTGGCTGGAGGGC
ACCTCCCAGGGAGCCACAGGCATCTTCCCAGGGTCCTTCGTGAAGATCCTTAAGGACTTTCCCGAGGACG
AGGACACCACCAACTGGCTACGATGCTACTTCTATGAAGACACAGGCAAAACCATCAAGGACATTGCGGT
GGAGGAGGACCTCAGCAGCACGCCCCTGTTCAAAGACCTGCTAGCGCTCATGAGGCGTGAGTTCCAGAGA
GAAGACATTGCCCTTAGCTACCAGGATGCTGAGGGGGACTTGGTTAGGCTGCTGTCAGATGAGGATGTGG
GACTCATGGTGAAGCAAGCCCGAGGCCTCCCTTCCCAGAAGCGCCTCTTCCCCTGGAAGCTGCATGTCAC
ACAGAAGGACAACTACAGTGTCTACAACACTGTCCCCTGA

Translation (339 aa):
MALAQQLRSESDFEQLPDDVAVSANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFYALQSKLE
ERFGPESKNSPFTCSLPTLPAKVYMGAKQEIAETRIPALNAYMKNLLSLPVCVLMDPDVRIFFYQSAYDA
EQVPQALRRLRPRTRKIKGVSPQGAIMDRMEAPRAEALFDFTGNSKLELSFKAGDVIFLLSKINKDWLEG
TSQGATGIFPGSFVKILKDFPEDEDTTNWLRCYFYEDTGKTIKDIAVEEDLSSTPLFKDLLALMRREFQR
EDIALSYQDAEGDLVRLLSDEDVGLMVKQARGLPSQKRLFPWKLHVTQKDNYSVYNTVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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