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Report for CCDS27576.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27576.2 Public Mus musculus 15 Adck5 23 108 98 CCDS HistoryNCBI Gene:268822Re-query CCDS DB by CCDS ID:27576.2Re-query CCDS DB by GeneID:268822See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 27576.1
The coding region has been updated to represent an alternative 5' splice pattern, resulting in an extended N-terminus that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27576.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162503.7 ENSMUSP00000125055.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162503.7Link to Ensembl Protein Viewer:ENSMUSP00000125055.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162503Re-query CCDS DB by Protein ID:ENSMUSP00000125055
Original member Current member NCBI NM_172960.3 NP_766548.2 Accepted alive Link to Nucleotide Sequence:NM_172960.3Link to Protein Sequence:NP_766548.2Re-query CCDS DB by Nucleotide ID:NM_172960Re-query CCDS DB by Protein ID:NP_766548Link to BLAST:NP_766548.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766548.2 582 Q80V03-1 582 99.8282% 0 1

Chromosomal Locations for CCDS 27576.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76576483 76576494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76587758 76587861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76589069 76589218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76593234 76593309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76593431 76593631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76593719 76593859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76593938 76594051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76594153 76594284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76594364 76594447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76594529 76594610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76594674 76594752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76594847 76594938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76595014 76595266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76595337 76595453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76595539 76595650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGTGGCGGCCGATGCGACTGTGTCACTTCCACTCTACCCTGCTGCAGAGCAGGCAGAAGCCCTGGCCGT
GCCCTGCCATATTCTTCAGGAGAAACTTCAAGAGCCCACCAGCAAGGACCTCAAGAGCCAGGCTGCTGTG
GAGGCGGGCACTCTCTGCCACTGTGGTGGGGACACCCTTCCTACTTGGAGCCTACTACTTCATGGCAGAG
GCATCGGAGAGGAGGAAGCTGCGACTTGCAGTCGATGGTATCGGGCGCTTTGGCAGGTCTGTGAAGATTG
GTTTGTTCATCTCCACGGACTACTGGTGGTGCACAAACGTTGTCCTTCGAGGAGTGGAAGAGAACAGCCC
GAAGTATGTGGAGATCATGTCTGCCTGTCACCAGCGTGCGGCTGACACCCTGGTGGCTGGAGCCATCCGC
AACGGGGGCCTCTATGTGAAACTGGGCCAAGGGCTGTGCTCCTTCAACCACCTGCTGCCGACAGAGTACA
TCCAGACGCTGCGTGTGCTGGAGGACAAGGCCCTCACTCGGGGCTTCCGGGAGGTGGATGAGTTGTTCCT
TGAAGACTTCCAGGCACTCCCTAATGAACTCTTCCAGGAGTTTGACTATGAGCCGATGGCTGCTGCAAGC
CTGGCTCAGGTGCACCGTGCCAAGCTACACGATGGCACTGATGTAGCTGTAAAGGTACAGTACATTGACC
TACGAGACCGCTTTGACGGAGACGTGCAGACCTTGGAGCTCCTGCTGCGGCTCGTGGAGCTCATGCACCC
CAGCTTCGGCTTCAGCTGGGTCCTACAGGACCTGAAGGGGACCCTGGTCCAGGAGCTGGACTTCGAGAAT
GAGGGCCGAAATGCTGAGCGCTGTGCTCAGGAGCTAAAGCACTTCCACTATGTTGTTATCCCTCGGGTGC
ACTGGGACAGGTCCAGCAAGCGGGTGCTGACAGCTGACTTCTGTAATGGCTGTAAGGTGAATGACATGGA
GGGCATCAAGAGTCAGGGGCTGGCAGTGCAGGATGTAGCAAAGAAGCTGATCCAGACCTTTGCTGAACAG
ATCTTCCACACTGGCTTCATTCACTCTGACCCCCACCCTGGCAATGTTCTGGTGCGGAAAGGTCCAGATG
GAAAGGCAGAGCTGGTGCTCCTGGACCACGGGCTCTACCAGTTCCTGGACGAGAAGGACCGATCCTCCCT
CTGCCAGCTGTGGCGGGCCATCATCCTGAGGGACAATGCTGCAATGAAGAAACATGCAGCTGCACTTGGG
GTCCAAGACTACATGCTCTTCTCTGAGGTGCTCATGCAGCGACCAGTACGCCTGGGCCAACTGTGGGGTT
CCCACCTGATCAGCCGGGAGGAGGCGGCCTACATGCAGGACATGGCCCGTGAACACTTTGATGGCATAAT
GGAAGTGCTCAAGGCATTGCCACGGCCTATGCTGCTAGTGCTGCGAAACATCAACACAGTGCGCGCCATC
AACTCGAACCTGGGCACCCCTGTCGACCGCTACTTCCTCATGGCCAAGAGTGCTGTCTGGGGTTGGAGCC
GCCTGGTGGGTGCAGCGTACCAAGGCATTTACGGCAGCAGCCTCCTGCGCCACATCAAGGTCCTCTGGGA
GGCATTAAAGTTTGAGATGGCCCTGAGGCTGGAAATCCTAGCCATGCGGCTCACCGCCCTCATGCTGCGT
GTTCTGGTCCGCCTGGGCTTTGCCCCCAAGGCTGAGGCCGAGGAGGTCTATCAGTACCTGGAGATGTAG

Translation (582 aa):
MWRPMRLCHFHSTLLQSRQKPWPCPAIFFRRNFKSPPARTSRARLLWRRALSATVVGTPFLLGAYYFMAE
ASERRKLRLAVDGIGRFGRSVKIGLFISTDYWWCTNVVLRGVEENSPKYVEIMSACHQRAADTLVAGAIR
NGGLYVKLGQGLCSFNHLLPTEYIQTLRVLEDKALTRGFREVDELFLEDFQALPNELFQEFDYEPMAAAS
LAQVHRAKLHDGTDVAVKVQYIDLRDRFDGDVQTLELLLRLVELMHPSFGFSWVLQDLKGTLVQELDFEN
EGRNAERCAQELKHFHYVVIPRVHWDRSSKRVLTADFCNGCKVNDMEGIKSQGLAVQDVAKKLIQTFAEQ
IFHTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDNAAMKKHAAALG
VQDYMLFSEVLMQRPVRLGQLWGSHLISREEAAYMQDMAREHFDGIMEVLKALPRPMLLVLRNINTVRAI
NSNLGTPVDRYFLMAKSAVWGWSRLVGAAYQGIYGSSLLRHIKVLWEALKFEMALRLEILAMRLTALMLR
VLVRLGFAPKAEAEEVYQYLEM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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