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Report for CCDS27555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27555.1 Public Mus musculus 15 Gfus 23 108 98 CCDS HistoryNCBI Gene:22122Re-query CCDS DB by CCDS ID:27555.1Re-query CCDS DB by GeneID:22122See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023231.6 ENSMUSP00000023231.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023231.6Link to Ensembl Protein Viewer:ENSMUSP00000023231.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023231Re-query CCDS DB by Protein ID:ENSMUSP00000023231
Original member Current member EBI ENSMUST00000229641.1 ENSMUSP00000155139.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229641.1Link to Ensembl Protein Viewer:ENSMUSP00000155139.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229641Re-query CCDS DB by Protein ID:ENSMUSP00000155139
Original member NCBI NM_001357005.1 NP_001343934.1 Updated not alive Link to Nucleotide Sequence:NM_001357005.1Link to Protein Sequence:NP_001343934.1Re-query CCDS DB by Nucleotide ID:NM_001357005Re-query CCDS DB by Protein ID:NP_001343934
Current member NCBI NM_001357005.2 NP_001343934.1 Accepted alive Link to Nucleotide Sequence:NM_001357005.2Link to Protein Sequence:NP_001343934.1Re-query CCDS DB by Nucleotide ID:NM_001357005Re-query CCDS DB by Protein ID:NP_001343934Link to BLAST:NP_001343934.1
Original member NCBI NM_031201.1 NP_112478.1 Updated not alive Link to Nucleotide Sequence:NM_031201.1Link to Protein Sequence:NP_112478.1Re-query CCDS DB by Nucleotide ID:NM_031201Re-query CCDS DB by Protein ID:NP_112478
Current member NCBI NM_031201.2 NP_112478.1 Accepted alive Link to Nucleotide Sequence:NM_031201.2Link to Protein Sequence:NP_112478.1Re-query CCDS DB by Nucleotide ID:NM_031201Re-query CCDS DB by Protein ID:NP_112478Link to BLAST:NP_112478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343934.1 321 P23591 321 100% 0 0
NP_112478.1 321 P23591 321 100% 0 0

Chromosomal Locations for CCDS 27555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75924939 75924994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75925285 75925384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75925583 75925662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75925793 75925859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75926129 75926193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75926324 75926457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75926799 75926872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75926967 75927095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75928429 75928543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75928892 75929037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGGCGAACCCCATGGATCCATGAGGATCCTAGTGACAGGGGGCTCTGGACTGGTGGGTAGAGCCATCC
AGAAGGTGGTTGCAGATGGGGCCGGCTTACCTGGAGAGGAATGGGTGTTTGTCTCCTCCAAAGATGCAGA
TCTGACGGATGCAGCCCAAACCCAAGCACTCTTCCAGAAAGTACAGCCCACCCACGTCATCCATCTCGCT
GCAATGGTAGGCGGCCTTTTCCGGAATATCAAATACAACTTGGATTTCTGGCGGAAAAACGTGCACATCA
ATGACAACGTCCTGCATTCGGCCTTCGAGGTGGGCGCTCGCAAGGTGGTCTCCTGCCTGTCCACCTGCAT
CTTCCCTGACAAGACCACCTATCCTATTGACGAGACAATGATCCACAACGGGCCGCCTCACAGCAGCAAT
TTCGGGTACTCATACGCCAAGAGGATGATTGACGTGCAGAACAGAGCCTACTTCCAGCAGCACGGCTGTA
CCTTCACCGCCGTCATCCCTACCAATGTCTTTGGGCCTTATGACAACTTCAACATCGAAGATGGCCACGT
GCTACCCGGCCTCATCCATAAGGTGCACCTGGCCAAGAGTAGTGACTCGGCCCTGACGGTGTGGGGTACA
GGGAAGCCGCGGAGGCAGTTCATCTACTCACTGGACCTCGCCCGGCTCTTCATCTGGGTCCTACGGGAGT
ACAGTGAGGTGGAGCCCATCATCCTCTCAGTGGGTGAGGAAGATGAAGTGTCCATCAAGGAGGCAGCTGA
GGCTGTAGTGGAGGCCATGGACTTCAATGGGGAAGTCACTTTTGATTCAACAAAGTCAGATGGGCAATAT
AAGAAGACAGCCAGCAATGGCAAGTTGCGGTCCTACTTGCCCGACTTCCGTTTCACACCCTTCAAGCAGG
CTGTGAAGGAAACCTGCACTTGGTTCACCGACAACTATGAGCAGGCCCGGAAGTAA

Translation (321 aa):
MGEPHGSMRILVTGGSGLVGRAIQKVVADGAGLPGEEWVFVSSKDADLTDAAQTQALFQKVQPTHVIHLA
AMVGGLFRNIKYNLDFWRKNVHINDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHSSN
FGYSYAKRMIDVQNRAYFQQHGCTFTAVIPTNVFGPYDNFNIEDGHVLPGLIHKVHLAKSSDSALTVWGT
GKPRRQFIYSLDLARLFIWVLREYSEVEPIILSVGEEDEVSIKEAAEAVVEAMDFNGEVTFDSTKSDGQY
KKTASNGKLRSYLPDFRFTPFKQAVKETCTWFTDNYEQARK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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