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Report for CCDS27517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27517.1 Public Mus musculus 15 Slc45a4 23 108 98 CCDS HistoryNCBI Gene:106068Re-query CCDS DB by CCDS ID:27517.1Re-query CCDS DB by GeneID:106068See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076224.11 ENSMUSP00000075577.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076224.11Link to Ensembl Protein Viewer:ENSMUSP00000075577.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076224Re-query CCDS DB by Protein ID:ENSMUSP00000075577
Original member Current member EBI ENSMUST00000151288.7 ENSMUSP00000121775.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151288.7Link to Ensembl Protein Viewer:ENSMUSP00000121775.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151288Re-query CCDS DB by Protein ID:ENSMUSP00000121775
Original member Current member NCBI NM_001033219.4 NP_001028391.2 Accepted alive Link to Nucleotide Sequence:NM_001033219.4Link to Protein Sequence:NP_001028391.2Re-query CCDS DB by Nucleotide ID:NM_001033219Re-query CCDS DB by Protein ID:NP_001028391Link to BLAST:NP_001028391.2
Original member Current member NCBI NM_001357747.1 NP_001344676.1 Accepted alive Link to Nucleotide Sequence:NM_001357747.1Link to Protein Sequence:NP_001344676.1Re-query CCDS DB by Nucleotide ID:NM_001357747Re-query CCDS DB by Protein ID:NP_001344676Link to BLAST:NP_001344676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028391.2 785 Q0P5V9-1 785 100% 0 0
NP_001344676.1 785 Q0P5V9-1 785 100% 0 0

Chromosomal Locations for CCDS 27517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 73581765 73582130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73584338 73584549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73585288 73585387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73586019 73587085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73587545 73587724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73589386 73589574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73605442 73605685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2358 nt):
ATGAAAATGGCTCCGCAGAATGCCGACTCGGAATCTATGCAAGTACAAGAGCTGCCTGTGCCCCTGCCAG
ACCCTCAGAAACCCAGAGACCCAGAGGCGGAGACCCAAGAGGAGACCACAAGCGAGGGGTCCATAGACAG
AATCCCCACACGCCTATGGGTCATGCATGGGGCAGTGATGTTTGGCAGGGAATTTTGTTACGCGATGGAG
ACAGCACTGGTTACACCTATACTGTTACAGATAGGCCTCCCTGAGAAGTACTACAGCCTGACCTGGTTCC
TGAGCCCCGTCCTCGGCCTCATCTTCACACCGCTTATTGGCTCTGCAAGTGACCGCTGCACCCTGAGCTG
GGGCCGCCGGCGGCCCTTCATCCTTGCGCTGTGTGTGGGGGTCCTCATTGGTGTTGCACTTTTCCTCAAC
GGCTCCGCCATAGGTCTGGCGCTCGGTGATGTTCCCAGCCGGCAGCCCATTGGCATTGTCCTCACGGTGC
TGGGAGTGGTGGTCCTGGATTTCAGTGCCGATGCAACTGAAGGGCCCATTCGTGCCTACCTGCTGGATGT
GGTAGACAGTGAGGAGCAAGACATGGCCCTCAACATACACGCCTTCTCTGCTGGCCTTGGTGGGGCCATT
GGCTACGTGCTGGGTGGGCTGGACTGGACGCAGACCTTCCTAGGTGACTGGTTCCAGACGCAGAACCAGG
TGCTGTTCTTCTTCGCTGCCGTCATCTTCTCCGTGTCGGTGGCTCTGCATCTCTTCAGCATCGAGGAGGA
GCAGTACAGCCCACAGCAGGACCGCGGGCCTGAGGATCCCACCCTGCCCGGCACCAGCGTTCAGCCTGGC
GCCCCAGCCCCTGCCTCCCGCCTCAGCTCCCTTGGTGGGGGCATGCAGGACGGCAGCCCCCCATTCCCAG
ATGAGGTACAGTCAGAGCACGAGCTGTCCTTGGACTACCTCGATGTGGACATCGTGCGCAGCAAGAGTGA
CTCGGTGCTGCACATGGCCGACGCCACACTGGACATGGAGCCCCAGCTGCTCTTCCTGCATGACATCGAA
CCCTCCATCTTCCAAGACGCTTCCTACCCCAGCACCCCCCAGAGCACCAGCCAAGAGCTTCTGAGGGCCA
AGCTGCCCCGCCTGTCCACGTTCCTCAGGGAGTCCACCAAGGAGGACGACACCTTGCTTGATAATCACTT
GAATGAAGCTAAAGTCCCAAATGGGAGAGGCTCCCCACCAATCAACTCCCTCAGCCGCTCCAAGGTAGAC
TTGAAGCCCTCAGTCACATCTGGTTCCATGAGGCGGCGTAGGCACATGTTTCACAGGCAGGCTTCTAGCA
CCTTCTCCTACTACGGCAAGATTGGATCCCACTGCTACCGATACCGCCGGGCCAACGCAGTGGTCCTCAT
CAAGCCGTCCCGAAGCATGAGCGACCTGTATGACCTGCAGCAGCGGCAGCGCTCCCGGCACCGCAACCAG
AGTGGGGCCACTGCCTCCAGCGGGGACACGGAGAGTGAGGAGGGTGAGACAGAGACCACCGTGCGCCTGC
TGTGGCTGTCCATGCTGAAGATGCCCAAGGAGCTGATGTGGCTCTGCCTCTGTCACCTACTCACTTGGTT
CTCCGTCATCGCAGAGGCTGTCTTCTATACTGACTTCATGGGCCAGGTTATCTTCAAAGGGAACCCGCAG
GCCCCCTCCAACTCCACCAAGTGGCATGCCTACAATGCTGGCGTGAAGATGGGCTGCTGGGGCCTGGTCA
TCTACGCTGCTACTGGTGCTATCTGCTCAGCCTTGCTACAGAAGTACCTGGACAACTATGACCTGAGCAT
CAGGATCATCTACATGTTGGGGACACTGGGCTTCTCCGTGGGCACCGCTGTGATGGCCATGTTTCCCAAC
GTCTACGTGGCCATGGTCACCATCAGCACCATGGGTGTTGTCTCGATGAGCATCTCCTACTGCCCCTATG
CCCTCCTAGGGCACTACCATGACATCAAGGAGTATGTCCACCACAGTCCGGGGAATTCCAAGCGTGGATT
TGGCATTGACTGCGCCATCCTCTCCTGTCAGGTCTACATCTCCCAGATCCTGGTTGCATCTGCCCTTGGG
GGCGTGGTCGACGCTGTGAATAGTATCGTTGTCATCCCCATAGTGGCCTCTGTAGGCTCTTTCCTGGGCT
TCTTGACAGCCACATTCCTGGTCATCTACCCTGAGGTGTCAGAGGAACCTAAGGAGGAACAGAAAGGCCT
GTCCTCAGGGCCCGCTGGCGAAGGCGAGGGTGGAGCGGGCAGTGAGAAGCCCACTGTACTGAAGCTGTCT
CGGAAAGGGGGCCTTCGGGGGCTGGTGGAGACGGAGTCCATGGTGTGA

Translation (785 aa):
MKMAPQNADSESMQVQELPVPLPDPQKPRDPEAETQEETTSEGSIDRIPTRLWVMHGAVMFGREFCYAME
TALVTPILLQIGLPEKYYSLTWFLSPVLGLIFTPLIGSASDRCTLSWGRRRPFILALCVGVLIGVALFLN
GSAIGLALGDVPSRQPIGIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQDMALNIHAFSAGLGGAI
GYVLGGLDWTQTFLGDWFQTQNQVLFFFAAVIFSVSVALHLFSIEEEQYSPQQDRGPEDPTLPGTSVQPG
APAPASRLSSLGGGMQDGSPPFPDEVQSEHELSLDYLDVDIVRSKSDSVLHMADATLDMEPQLLFLHDIE
PSIFQDASYPSTPQSTSQELLRAKLPRLSTFLRESTKEDDTLLDNHLNEAKVPNGRGSPPINSLSRSKVD
LKPSVTSGSMRRRRHMFHRQASSTFSYYGKIGSHCYRYRRANAVVLIKPSRSMSDLYDLQQRQRSRHRNQ
SGATASSGDTESEEGETETTVRLLWLSMLKMPKELMWLCLCHLLTWFSVIAEAVFYTDFMGQVIFKGNPQ
APSNSTKWHAYNAGVKMGCWGLVIYAATGAICSALLQKYLDNYDLSIRIIYMLGTLGFSVGTAVMAMFPN
VYVAMVTISTMGVVSMSISYCPYALLGHYHDIKEYVHHSPGNSKRGFGIDCAILSCQVYISQILVASALG
GVVDAVNSIVVIPIVASVGSFLGFLTATFLVIYPEVSEEPKEEQKGLSSGPAGEGEGGAGSEKPTVLKLS
RKGGLRGLVETESMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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