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Report for CCDS27509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27509.1 Public Mus musculus 15 Sla 23 108 98 CCDS HistoryNCBI Gene:20491Re-query CCDS DB by CCDS ID:27509.1Re-query CCDS DB by GeneID:20491See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100572.9 ENSMUSP00000098138.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100572.9Link to Ensembl Protein Viewer:ENSMUSP00000098138.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100572Re-query CCDS DB by Protein ID:ENSMUSP00000098138
Original member Current member EBI ENSMUST00000164163.7 ENSMUSP00000127901.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164163.7Link to Ensembl Protein Viewer:ENSMUSP00000127901.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164163Re-query CCDS DB by Protein ID:ENSMUSP00000127901
Original member Current member EBI ENSMUST00000168589.7 ENSMUSP00000130222.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168589.7Link to Ensembl Protein Viewer:ENSMUSP00000130222.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168589Re-query CCDS DB by Protein ID:ENSMUSP00000130222
Original member NCBI NM_009192.3 NP_033218.1 Updated not alive Link to Nucleotide Sequence:NM_009192.3Link to Protein Sequence:NP_033218.1Re-query CCDS DB by Nucleotide ID:NM_009192Re-query CCDS DB by Protein ID:NP_033218
Current member NCBI NM_009192.4 NP_033218.1 Accepted alive Link to Nucleotide Sequence:NM_009192.4Link to Protein Sequence:NP_033218.1Re-query CCDS DB by Nucleotide ID:NM_009192Re-query CCDS DB by Protein ID:NP_033218Link to BLAST:NP_033218.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033218.1 281 Q60898-1 281 100% 0 0

Chromosomal Locations for CCDS 27509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 66782542 66782755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66783609 66783756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66787037 66787168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66789682 66789785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66792225 66792311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66793681 66793780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66801431 66801491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGGGAATAGCATGAAATCCACATCTCCACCTTCGGAGAGGCCGTTATCCAGCAGTGAGGGACTTGAAA
GTGACTTCCTGGCTGTGCTGACTGACTACCCATCTCCTGACATTAGCCCCCCAATATTCCGGAGAGGAGA
GAAACTGCGTGTAATTTCTGATGAAGGGGGCTGGTGGAAAGCCATTTCTCTCAGCACTGGCCGGGAAAGT
TATATTCCAGGGATATGTGTGGCCAGAGTGTACCATGGCTGGCTGTTTGAAGGACTGGGCAGGGACAAGG
CTGAGGAACTGCTGCAGCTGCCAGATACAAAGATTGGTAGCTTCATGATTCGAGAGAGTGAAACAAAGAA
AGGTTTCTATTCGCTGTCTGTGAGACACAGGCAGGTGAAGCATTATCGAATCTTCCGTCTTCCCAACAAC
TGGTACTACATCTCACCAAGGCTCACCTTCCAATGCCTGGAGGACCTGGTGACTCATTATTCTGAAGTGG
CTGATGGTCTATGCTGTGTGCTCACCACACCCTGTCTGGCACAGAACATACCTGCTCCAACATCCCACCC
ATCACCTTGCACCAGCCCTGGTTCACCTGTCACCTTGCGCCAGAAGACCTTTGACTGGAAGAGGGTATCC
AGATTGCAAGAAGGTTCAGAGGGAGCAGAGAACCCACTCAGAGTGGACGAATCCCTTTTCAGCTATGGTC
TTCGGGAAAGCATTGCCTCTTACCTGTCCCTGACAGGGGATGACAGCAGCTCCTTCGACCGGAAGAAGAA
GAGTCTCTCCCTAATGTACACTGGCAGCAAACGCAAGAGTTCCTTTTTTTCAGCACCCCAGTACTTTGAA
GATTAA

Translation (281 aa):
MGNSMKSTSPPSERPLSSSEGLESDFLAVLTDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRES
YIPGICVARVYHGWLFEGLGRDKAEELLQLPDTKIGSFMIRESETKKGFYSLSVRHRQVKHYRIFRLPNN
WYYISPRLTFQCLEDLVTHYSEVADGLCCVLTTPCLAQNIPAPTSHPSPCTSPGSPVTLRQKTFDWKRVS
RLQEGSEGAENPLRVDESLFSYGLRESIASYLSLTGDDSSSFDRKKKSLSLMYTGSKRKSSFFSAPQYFE
D


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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