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Report for CCDS27481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27481.1 Public Mus musculus 15 Slc22a22 23 108 98 CCDS HistoryNCBI Gene:210463Re-query CCDS DB by CCDS ID:27481.1Re-query CCDS DB by GeneID:210463See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27481.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022995.12 ENSMUSP00000022995.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022995.12Link to Ensembl Protein Viewer:ENSMUSP00000022995.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022995Re-query CCDS DB by Protein ID:ENSMUSP00000022995
Original member Current member EBI ENSMUST00000110196.7 ENSMUSP00000105825.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110196.7Link to Ensembl Protein Viewer:ENSMUSP00000105825.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110196Re-query CCDS DB by Protein ID:ENSMUSP00000105825
Original member Current member NCBI NM_001357930.1 NP_001344859.1 Accepted alive Link to Nucleotide Sequence:NM_001357930.1Link to Protein Sequence:NP_001344859.1Re-query CCDS DB by Nucleotide ID:NM_001357930Re-query CCDS DB by Protein ID:NP_001344859Link to BLAST:NP_001344859.1
Original member Current member NCBI NM_172378.3 NP_759010.1 Accepted alive Link to Nucleotide Sequence:NM_172378.3Link to Protein Sequence:NP_759010.1Re-query CCDS DB by Nucleotide ID:NM_172378Re-query CCDS DB by Protein ID:NP_759010Link to BLAST:NP_759010.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344859.1 554 Q8R0S9 554 100% 0 0
NP_759010.1 554 Q8R0S9 554 100% 0 0

Chromosomal Locations for CCDS 27481.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 57244032 57244101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57244823 57245026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57247439 57247547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57249560 57249774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57250863 57250978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57254193 57254316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57255087 57255255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57256475 57256629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57259077 57259180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57263273 57263671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGATTTTGATGAAATTCTACATCATGTAGGTGACAGTGGAAGATTTCAGATTTGTATGATCATCCTTC
TCAACATTTTATCCTTGGTGTTATCCCCTCATGATGTCCTGGAGAATTTTACAGCAGCCATCCCTGCTCA
TCACTGTAGTATAAACCTTGACAATTCAAGATCTGAAGTTAGTACTGACATGAACTTAACTACTGAAGAT
TTGATGAAGGTCTCCATCCCAATGGGCCCAAATCAGAAACCCGAGCAATGCCGACGCTTTAGGTACACCC
AATGGCAATTTTTAGATTCCAACATATCAACTTTTAACAGCACTGAGCTAGAGACTGAGCCGTGTCTAGA
TGGATGGACATATGACCACAGTGTTTTTACTTCTACCATTGTCACTGAGTGGGATTTAGTATGTGATTTT
CAGTCATTCAAATACTATGCACAAGCCACGTCTTTGGCAGGACATTTGGTATCTTGTCCTCTATCTGGCA
TTATTTCTGACAGGTTTGGAAGGAAGCCATTGTTGATGTATTGTTCCCTAGCCTATGGGGCTGTGGGAAC
CTACTGTGCCTTTGCCCCCAATTTCTCCGTTTACTGTGTTTTGAGATTCCTGTTATCTGCCTTCCAAAGT
ACTATTTTGATCAACTCTCTTATCCTTGTTTTGGAAGAAGCATCAGTCCAGTGGCACCCCACAATCATAG
TACTCAGTGGACTGTTCAACAGTATTGGCCAGGGTGTACTTGGGGGACTAGCCTATGTGATTTCGGATTG
GCACTTACTTCAACTTGCATATGCCTTGCCCTTCTTCATCTTTTTTGTTTTGTTCTGCTGGGTGCCAGAA
TCAGTCCGGTGGCTCATAATCACTGGCAAAACAGATCAAGCATGGAAGGAACTCCAGAGAATTGCCTCCA
TCAATGGGAAGAAAGGCATTGCACAAAATCTAACTACTGAGGACTTGCGATCCAAACTTAAGAAAGATGT
GAATTCAACTGGAAAGCTTTTCAGAATAAAGGACATCTTTATTAATCCCTTGATACGTAAAATAGTGCTT
TCGAATTCCAGTTTACTTTTTGCAGAACTTTTCAGCTTTGTTGGCCTCTTGTTGGATGTTCAACTGTTGG
GAAAGAACATGTTCTTGACCCAGATTTTTCTAGGAGCGATAGACGTGCCCAGTAAATCACTCACATATTT
TACAATAAGAAATGTAAGCCGTCGTCCTTTAATTGCTTTTTTGCTACTTACAACTGGAAGTTGTATTACC
ATCACCATATTCATCTCTGAAGAGATGTATGTCCTGCGTACTATTATTTTCATTTTGGGAAAAGGATGTT
TTGCAGCTTTCACTTGTATAAGCACAACCTACATCAATGAACTCTCACCAGTAGAACTCAGGTCAACTCT
AAATGGTGTTTTTTTAGCTGTTGTTCGATTGGCAGGGGTCCTGTCTGCACTAACACTTGCTACTAGAAAG
TATTTTGTATATCTTCCCATGATACTCTATGGAGTCCTACCCATCGTGGCAACAATCAGCATCCTCTTTC
TGCCAGAGACCTTTAACCTTCCACATACTGACATTATCAAGGATATGGAGAAAAGGAAAAGATTGATGAG
CAAAAACATCAGTAAAAAAGAAGGGCAAGACTTCTTGGAAACTACCGAGTGCTAA

Translation (554 aa):
MDFDEILHHVGDSGRFQICMIILLNILSLVLSPHDVLENFTAAIPAHHCSINLDNSRSEVSTDMNLTTED
LMKVSIPMGPNQKPEQCRRFRYTQWQFLDSNISTFNSTELETEPCLDGWTYDHSVFTSTIVTEWDLVCDF
QSFKYYAQATSLAGHLVSCPLSGIISDRFGRKPLLMYCSLAYGAVGTYCAFAPNFSVYCVLRFLLSAFQS
TILINSLILVLEEASVQWHPTIIVLSGLFNSIGQGVLGGLAYVISDWHLLQLAYALPFFIFFVLFCWVPE
SVRWLIITGKTDQAWKELQRIASINGKKGIAQNLTTEDLRSKLKKDVNSTGKLFRIKDIFINPLIRKIVL
SNSSLLFAELFSFVGLLLDVQLLGKNMFLTQIFLGAIDVPSKSLTYFTIRNVSRRPLIAFLLLTTGSCIT
ITIFISEEMYVLRTIIFILGKGCFAAFTCISTTYINELSPVELRSTLNGVFLAVVRLAGVLSALTLATRK
YFVYLPMILYGVLPIVATISILFLPETFNLPHTDIIKDMEKRKRLMSKNISKKEGQDFLETTEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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