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Report for CCDS27416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27416.1 Public Mus musculus 15 Laptm4b 23 108 98 CCDS HistoryNCBI Gene:114128Re-query CCDS DB by CCDS ID:27416.1Re-query CCDS DB by GeneID:114128See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022867.4 ENSMUSP00000022867.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022867.4Link to Ensembl Protein Viewer:ENSMUSP00000022867.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022867Re-query CCDS DB by Protein ID:ENSMUSP00000022867
Original member NCBI NM_033521.3 NP_277056.1 Updated not alive Link to Nucleotide Sequence:NM_033521.3Link to Protein Sequence:NP_277056.1Re-query CCDS DB by Nucleotide ID:NM_033521Re-query CCDS DB by Protein ID:NP_277056
Current member NCBI NM_033521.4 NP_277056.1 Accepted alive Link to Nucleotide Sequence:NM_033521.4Link to Protein Sequence:NP_277056.1Re-query CCDS DB by Nucleotide ID:NM_033521Re-query CCDS DB by Protein ID:NP_277056Link to BLAST:NP_277056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_277056.1 227 Q91XQ6 227 100% 0 0

Chromosomal Locations for CCDS 27416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 34238324 34238422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34258681 34258792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34272344 34272417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34273228 34273350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34276136 34276234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34277432 34277527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34283300 34283380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGAAGATGGTCGCTCCCTGGACTCGGTTCTACTCCCACAGCTGCTGTTTGTGCTGCCATGTCCGCACCG
GCACCATCCTGCTGGGCGTCTGGTACCTGATCATCAATGCTGTGGTCCTGCTGATCCTGCTGAGTGCCCT
GGCAGATCCCAATCAGTATCACTTTTCAGGCTCTGAACTAGGAGGGGAGTTTGAGTTCATGGATGATGCC
AACATGTGCATTGCTATCGCAATCTCTCTCCTCATGATCCTGATATGTGCCATGGCTACTTACGGTGCAT
ACAAGCAACATGCTGCCTGGATCATCCCGTTCTTCTGTTACCAGATCTTTGATTTTGCCCTGAATACTTT
GGTTGCAATCACTGTGCTTGTCTATCCGAACTCCATTCAGGAATACATACGACAGCTGCCTCCTAGCTTT
CCCTACAGAGATGATATAATGTCCGTGAATCCTACCTGTTTGGTCCTTATTATTCTTCTGTTTATCGGCA
TTCTTTTGACACTTAAGGGCTACTTGATTAGCTGCGTTTGGAGCTGCTACAGGTACATCAACGGCAGGAA
CTCCTCCGATGTCCTGGTGTATGTTACCAGCAATGATACCACAGTGCTGCTGCCTCCGTACGATGATGCT
ACTGCTGTGCCTAGCACTGCCAAGGAACCACCACCACCTTACGTGTCCGCCTGA

Translation (227 aa):
MKMVAPWTRFYSHSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPNQYHFSGSELGGEFEFMDDA
NMCIAIAISLLMILICAMATYGAYKQHAAWIIPFFCYQIFDFALNTLVAITVLVYPNSIQEYIRQLPPSF
PYRDDIMSVNPTCLVLIILLFIGILLTLKGYLISCVWSCYRYINGRNSSDVLVYVTSNDTTVLLPPYDDA
TAVPSTAKEPPPPYVSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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