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Report for CCDS27414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27414.1 Public Mus musculus 15 Cpq 23 108 98 CCDS HistoryNCBI Gene:54381Re-query CCDS DB by CCDS ID:27414.1Re-query CCDS DB by GeneID:54381See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042167.9 ENSMUSP00000039046.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042167.9Link to Ensembl Protein Viewer:ENSMUSP00000039046.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000042167Re-query CCDS DB by Protein ID:ENSMUSP00000039046
Original member Current member EBI ENSMUST00000228916.1 ENSMUSP00000154400.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228916.1Link to Ensembl Protein Viewer:ENSMUSP00000154400.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228916Re-query CCDS DB by Protein ID:ENSMUSP00000154400
Original member Current member NCBI NM_018755.2 NP_061225.2 Accepted alive Link to Nucleotide Sequence:NM_018755.2Link to Protein Sequence:NP_061225.2Re-query CCDS DB by Nucleotide ID:NM_018755Re-query CCDS DB by Protein ID:NP_061225Link to BLAST:NP_061225.2
Original member Current member NCBI NM_176073.4 NP_788262.1 Accepted alive Link to Nucleotide Sequence:NM_176073.4Link to Protein Sequence:NP_788262.1Re-query CCDS DB by Nucleotide ID:NM_176073Re-query CCDS DB by Protein ID:NP_788262Link to BLAST:NP_788262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061225.2 470 Q9WVJ3 470 100% 0 0
NP_788262.1 470 Q9WVJ3 470 100% 0 0

Chromosomal Locations for CCDS 27414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 33212837 33213263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 33249926 33250133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 33302340 33302547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 33381336 33381447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 33466626 33466717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 33497163 33497364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 33594094 33594257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGAGGTCCCTTTTCTTCCTGTTCATTGTTCACCTTTTAGCCTTGGGCTCTGGTAAAGCTGTATTCAAGA
ATGGTGTTTCTCAGCGAACATTTCGAGAAATAAAAGAAGAAATAGCCAACTATGAAGATGTTGCTAAAGC
AATTATCAACCTTGCTGTTTATGGTAAATACCAGAACCGGTCCTATGAGCGTTTGGGACTTCTAGTTGAT
ACTGTTGGACCCAGACTGAGTGGCTCTAAGAACCTAGAGAAAGCTATTCAAATCATGTACCAAAACCTGC
AGCAAGATGGGCTAGAAAATGTTCACCTGGAGCAGGTCAGAATACCCCACTGGGAGAGGGGAGAAGAATC
TGCAGTGATGCTTGAGCCTCGAATTCACAAGATGGCTATTCTAGGTCTTGGCAGCAGCATTGGGACTCCC
CCAGGAGGCATCACAGCAGAAGTGCTGGTGGTAGCCTCTTTTGATGAACTTCAAAGAAGAGCATCAGAAG
CAAGAGGGAAGATCATTGTTTATAACCAGCCTTACACTGGCTATGAGAAGACTGTGCAGTACCGGGTGCA
GGGAGCTGTGGAAGCTGCCAAGGTGGGAGCTGTGGCATCCCTCATCCAATCAGTAGCTTCCTTTTCCATC
TACAGTCCTCACACAGGTATTCAGAAATATCAAGATGGTGTGCCCAAGATTCCAACAGCCTGTATCACAG
TAGAAGATGCAGAAATGATGTCTCGAATGGCTTCTCGTGGGAACAAAATTGTCATTCATCTGGAAATGGG
AGCAAAGACCTATCCAGATACTGATTCCTTCAATACTGTTGCAGAGATCACTGGGAGCATGTATCCAGAG
GAAGTTGTCCTGGTCAGTGGACATTTGGACAGCTGGGATGTTGGGCAGGGTGCACTGGATGATGGTGGTG
GAGCCTTCATATCATGGGAAGCACTCTCACTTGTTAAAGATCTTGGGCTGCGTCCAAAGAGGACTCTGCG
CCTGGTGCTCTGGACTGCAGAAGAACAAGGAGGAATTGGTGCCTCCCAGTATTATGAGCTACATAAGGCA
AATATTTCCAAGTACAGCTTGGTGATGGAAGCTGACTCAGGAACCTTCTTACCCACTGGACTGCAGTTCA
CTGGCAGTGACAAGGCCAGGGCTATCATGAAGGAAGTCATGAATCTTCTGCAACCCCTCAATGTCACCAA
GGTCTTTAGTAATGGAGAAGGAACTGATATTAACTTCTGGATCCAAGCTGGAGTACCTGGAGCCAGTCTG
CGTGATGACTTGTACAAGTATTTCTTTTTCCATCATTCCCACGGAGACACCATGACTGTCATGGATCCAA
AGCAGATGAATGTTGCTGCTGCTGTATGGGCTGTTGTCGCTTATGTTGTTGCAGACATGGATGAAATGCT
GCCCAGGTCCTAA

Translation (470 aa):
MRSLFFLFIVHLLALGSGKAVFKNGVSQRTFREIKEEIANYEDVAKAIINLAVYGKYQNRSYERLGLLVD
TVGPRLSGSKNLEKAIQIMYQNLQQDGLENVHLEQVRIPHWERGEESAVMLEPRIHKMAILGLGSSIGTP
PGGITAEVLVVASFDELQRRASEARGKIIVYNQPYTGYEKTVQYRVQGAVEAAKVGAVASLIQSVASFSI
YSPHTGIQKYQDGVPKIPTACITVEDAEMMSRMASRGNKIVIHLEMGAKTYPDTDSFNTVAEITGSMYPE
EVVLVSGHLDSWDVGQGALDDGGGAFISWEALSLVKDLGLRPKRTLRLVLWTAEEQGGIGASQYYELHKA
NISKYSLVMEADSGTFLPTGLQFTGSDKARAIMKEVMNLLQPLNVTKVFSNGEGTDINFWIQAGVPGASL
RDDLYKYFFFHHSHGDTMTVMDPKQMNVAAAVWAVVAYVVADMDEMLPRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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