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Report for CCDS2740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2740.1 Public Homo sapiens 3 RTP3 24 110 108 CCDS HistoryNCBI Gene:83597Re-query CCDS DB by CCDS ID:2740.1Re-query CCDS DB by GeneID:83597See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2740.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296142.4 ENSP00000296142.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296142.4Link to Ensembl Protein Viewer:ENSP00000296142.3Re-query CCDS DB by Nucleotide ID:ENST00000296142Re-query CCDS DB by Protein ID:ENSP00000296142
Original member Current member EBI ENST00000684260.1 ENSP00000507138.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684260.1Link to Ensembl Protein Viewer:ENSP00000507138.1Re-query CCDS DB by Nucleotide ID:ENST00000684260Re-query CCDS DB by Protein ID:ENSP00000507138
Original member Current member NCBI NM_031440.2 NP_113628.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031440.2Link to Protein Sequence:NP_113628.1Re-query CCDS DB by Nucleotide ID:NM_031440Re-query CCDS DB by Protein ID:NP_113628Link to BLAST:NP_113628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113628.1 232 Q9BQQ7 232 100% 0 0

Chromosomal Locations for CCDS 2740.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 46498063 46498217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 46500356 46500899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGCTGGGGACACAGAAGTGTGGAAGCAAATGTTTCAGGAGTTAATGCGGGAGGTGAAGCCATGGCACA
GGTGGACCCTGAGACCAGACAAGGGCCTTCTTCCCAACGTCCTGAAGCCAGGCTGGATGCAATACCAGCA
GTGGACCTTCGCCAGGTTCCAGTGCTCCTCCTGCTCTCGTAACTGGGCCTCTGCCCAAGTTCTGGTCCTT
TTCCACATGAACTGGAGTGAGGAGAAGTCCAGGGGCCAGGTGAAGATGAGGGTGTTTACCCAGAGATGTA
AGAAGTGCCCCCAACCTCTGTTTGAGGACCCTGAGTTCACACAAGAGAACATCTCAAGGATCCTGAAAAA
CCTGGTGTTCCGAATTCTGAAGAAATGCTATAGAGGAAGATTTCAGTTGATAGAGGAGGTTCCTATGATC
AAGGACATCTCTCTTGAAGGGCCACACAATAGTGACAACTGTGAGGCATGTCTGCAGGGCTTCTGTGCTG
GGCCCATACAGGTTACAAGCCTCCCCCCATCTCAGACCCCAAGAGTACACTCCATTTACAAGGTGGAGGA
GGTAGTTAAGCCCTGGGCCTCAGGAGAGAATGTCTATTCCTACGCATGCCAAAACCACATCTGTAGGAAC
TTAAGCATTTTCTGCTGTTGTGTCATTCTCATTGTTATCGTGGTGATTGTTGTAAAAACTGCTATATGA

Translation (232 aa):
MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSRNWASAQVLVL
FHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVFRILKKCYRGRFQLIEEVPMI
KDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRN
LSIFCCCVILIVIVVIVVKTAI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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