NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27361.1 Public Mus musculus 15 Oxct1 23 108 98 CCDS HistoryNCBI Gene:67041Re-query CCDS DB by CCDS ID:27361.1Re-query CCDS DB by GeneID:67041See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27361.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110690.8 ENSMUSP00000106318.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110690.8Link to Ensembl Protein Viewer:ENSMUSP00000106318.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110690Re-query CCDS DB by Protein ID:ENSMUSP00000106318
Original member Current member NCBI NM_024188.6 NP_077150.1 Accepted alive Link to Nucleotide Sequence:NM_024188.6Link to Protein Sequence:NP_077150.1Re-query CCDS DB by Nucleotide ID:NM_024188Re-query CCDS DB by Protein ID:NP_077150Link to BLAST:NP_077150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077150.1 520 Q9D0K2 520 100% 0 0

Chromosomal Locations for CCDS 27361.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 4026772 4026849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4035260 4035368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4037091 4037181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4047465 4047600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4053715 4053864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4057669 4057775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4059936 4059996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4091168 4091275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4092411 4092525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4094015 4094109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4096472 4096520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4101127 4101199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4101804 4101879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4128834 4128923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4142792 4142872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4147565 4147666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 4153728 4153769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCGGCTCTCAAACTCCTGTCCTCTGGGCTTCGGCTCGGCGCCTCAGCCCGCAGCTCGCGGGGCGCCC
TGCATAAGGGGTGTGTCTGCTACTTCTCTGTCAGTACTCGTCACCACACCAAATTTTACACAGATCCCGT
GGAAGCTGTAAAAGATATTCCTAATGGTGCAACCTTGCTGGTTGGTGGTTTTGGGCTGTGTGGTATTCCA
GAGAATCTTATAGGAGCTTTACTGAAGACTGGAGTAAAAGATCTAACTGCAGTCAGCAACAATGCAGGGG
TTGACAACTTCGGCCTGGGCCTTTTACTTCGATCCAAGCAGATAAAACGAATGATCTCCTCATATGTGGG
AGAAAATGCAGAATTTGAGCGACAGTTCCTTTCTGGTGAATTAGAAGTAGAGCTGACACCTCAGGGCACA
CTTGCCGAGAGGATCCGTGCCGGTGGAGCTGGAGTCCCTGCCTTCTACACCAGCACAGGGTATGGGACTC
TGGTACAGGAAGGAGGATCACCCATCAAATATAACAAAGATGGCAGTGTTGCCATTGCCAGCAAGCCACG
AGAGGTGAGGGAGTTTAACGGTCAGCACTTCATTTTGGAGGAAGCCATCACGGGAGATTTTGCTCTGGTG
AAAGCATGGAAAGCAGACCGGGCAGGCAATGTGATTTTCAGGAAAAGTGCAAGAAACTTCAATCTGCCAA
TGTGCAAAGCTGCAGGAACTACCGTGGTGGAGGTTGAAGAAATTGTAGACATTGGCTCATTTGCCCCAGA
AGATATCCACATTCCAAAGATTTATGTGCACCGCCTCATAAAGGGAGAGAAATATGAGAAGAGAATTGAG
CGTTTATCACTCCGAAAGGAAGGAGATGGAAAAGGCAAATCCGGTAAGCCTGGAGGCGATGTGAGGGAAC
GGATCATCAAGCGAGCCGCCCTGGAGTTTGAGGACGGCATGTACGCTAACTTGGGTATTGGGATTCCTCT
TCTGGCCAGCAACTTCATCAGTCCCAACATGACTGTTCATCTTCAAAGTGAAAATGGAGTCTTGGGCCTG
GGCCCATACCCACTGAAAGACGAAGCTGATGCGGATCTCATCAATGCAGGAAAGGAAACAGTTACTGTTC
TCCCAGGAGCCTCTTTCTTCTCCAGCGATGAGTCATTCGCCATGATTAGAGGGGGACATGTCAATCTAAC
AATGTTAGGAGCCATGCAGGTTTCTAAGTATGGTGACCTGGCCAACTGGATGATACCTGGAAAAATGGTG
AAAGGAATGGGAGGAGCTATGGATTTGGTGTCCAGTTCCAAAACCAAAGTGGTGGTCACCATGGAGCACT
CTGCGAAGGGAAATGCTCATAAAATCATGGAGAAATGTACACTACCACTGACGGGCAAACAGTGTGTCAA
CCGCATCATTACAGAAAAGGGTGTGTTTGACGTGGACAAGAAAAATGGTTTGACACTGATTGAGCTCTGG
GAAGGCCTGACTGTTGATGACATCAAGAAGAGCACAGGCTGTGACTTTGCAGTTTCACCAAACCTCATGC
CAATGCAGCAGATTTCAACTTGA

Translation (520 aa):
MAALKLLSSGLRLGASARSSRGALHKGCVCYFSVSTRHHTKFYTDPVEAVKDIPNGATLLVGGFGLCGIP
ENLIGALLKTGVKDLTAVSNNAGVDNFGLGLLLRSKQIKRMISSYVGENAEFERQFLSGELEVELTPQGT
LAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALV
KAWKADRAGNVIFRKSARNFNLPMCKAAGTTVVEVEEIVDIGSFAPEDIHIPKIYVHRLIKGEKYEKRIE
RLSLRKEGDGKGKSGKPGGDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGVLGL
GPYPLKDEADADLINAGKETVTVLPGASFFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKMV
KGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKGVFDVDKKNGLTLIELW
EGLTVDDIKKSTGCDFAVSPNLMPMQQIST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH