NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27331.1 Public Mus musculus 14 Dct 23 108 98 CCDS HistoryNCBI Gene:13190Re-query CCDS DB by CCDS ID:27331.1Re-query CCDS DB by GeneID:13190See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022725.3 ENSMUSP00000022725.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022725.3Link to Ensembl Protein Viewer:ENSMUSP00000022725.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000022725Re-query CCDS DB by Protein ID:ENSMUSP00000022725
Original member Current member NCBI NM_010024.3 NP_034154.2 Accepted alive Link to Nucleotide Sequence:NM_010024.3Link to Protein Sequence:NP_034154.2Re-query CCDS DB by Nucleotide ID:NM_010024Re-query CCDS DB by Protein ID:NP_034154Link to BLAST:NP_034154.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034154.2 517 P29812 517 100% 0 0

Chromosomal Locations for CCDS 27331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 118013031 118013203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118018592 118018793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118034238 118034373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118036451 118036630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118039610 118039776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118040461 118040561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118043008 118043307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 118051484 118051778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGGCCTTGTGGGATGGGGGCTTCTGCTGGGTTGTCTGGGCTGCGGAATTCTGCTCAGAGCTCGGGCTC
AGTTTCCCCGAGTCTGCATGACCTTGGATGGCGTGCTGAACAAGGAATGCTGCCCGCCTCTGGGTCCCGA
GGCAACCAACATCTGTGGATTTCTAGAGGGCAGGGGGCAGTGCGCAGAGGTGCAAACAGACACCAGACCC
TGGAGTGGCCCTTATATCCTTCGAAACCAGGATGACCGTGAGCAATGGCCGAGAAAATTCTTCAACCGGA
CATGCAAATGCACAGGAAACTTTGCTGGTTATAATTGTGGAGGCTGCAAGTTCGGCTGGACCGGCCCCGA
CTGTAATCGGAAGAAGCCGGCCATCCTAAGACGGAATATCCATTCCCTGACTGCCCAGGAGAGGGAGCAG
TTCTTGGGCGCCTTAGACCTGGCCAAGAAGAGTATCCATCCAGACTACGTGATCACCACGCAACACTGGC
TGGGGCTGCTCGGACCCAACGGGACCCAGCCCCAGATCGCCAACTGCAGCGTGTATGACTTTTTTGTGTG
GCTCCATTATTATTCTGTTCGAGACACATTATTAGGTCCAGGACGCCCCTATAAGGCCATTGATTTCTCT
CACCAAGGGCCTGCCTTTGTCACGTGGCACAGGTACCATCTGTTGTGGCTGGAAAGAGAACTCCAGAGAC
TCACTGGCAATGAGTCCTTTGCGTTGCCCTACTGGAACTTTGCAACCGGGAAGAACGAGTGTGACGTGTG
CACAGACGAGCTGCTTGGAGCAGCAAGACAAGATGACCCAACGCTGATTAGTCGGAACTCGAGATTCTCT
ACCTGGGAGATTGTGTGCGACAGCTTGGATGACTACAACCGCCGGGTCACACTGTGTAATGGAACCTATG
AAGGTTTGCTGAGAAGAAACAAAGTAGGCAGAAATAATGAGAAACTGCCAACCTTAAAAAATGTGCAAGA
TTGCCTGTCTCTCCAGAAGTTTGACAGCCCTCCCTTCTTCCAGAACTCTACCTTCAGCTTCAGGAATGCA
CTGGAAGGGTTTGATAAAGCAGACGGAACACTGGACTCTCAAGTCATGAACCTTCATAACTTGGCTCACT
CCTTCCTGAATGGGACCAATGCCTTGCCACACTCAGCAGCCAACGACCCTGTGTTTGTGGTCCTCCACTC
TTTTACAGACGCCATCTTTGATGAGTGGCTGAAGAGAAACAACCCTTCCACAGATGCCTGGCCTCAGGAA
CTGGCACCCATTGGTCACAACCGAATGTATAACATGGTCCCCTTCTTCCCACCGGTGACTAATGAGGAGC
TCTTCCTAACCGCAGAGCAACTTGGCTACAATTACGCCGTTGATCTGTCAGAGGAAGAAGCTCCAGTTTG
GTCCACAACTCTCTCAGTGGTCATTGGAATCCTGGGAGCTTTCGTCTTGCTCTTGGGGTTGCTGGCTTTT
CTTCAATACAGAAGGCTTCGCAAAGGCTATGCGCCCTTAATGGAGACAGGTCTCAGCAGCAAGAGATACA
CGGAGGAAGCCTAG

Translation (517 aa):
MGLVGWGLLLGCLGCGILLRARAQFPRVCMTLDGVLNKECCPPLGPEATNICGFLEGRGQCAEVQTDTRP
WSGPYILRNQDDREQWPRKFFNRTCKCTGNFAGYNCGGCKFGWTGPDCNRKKPAILRRNIHSLTAQEREQ
FLGALDLAKKSIHPDYVITTQHWLGLLGPNGTQPQIANCSVYDFFVWLHYYSVRDTLLGPGRPYKAIDFS
HQGPAFVTWHRYHLLWLERELQRLTGNESFALPYWNFATGKNECDVCTDELLGAARQDDPTLISRNSRFS
TWEIVCDSLDDYNRRVTLCNGTYEGLLRRNKVGRNNEKLPTLKNVQDCLSLQKFDSPPFFQNSTFSFRNA
LEGFDKADGTLDSQVMNLHNLAHSFLNGTNALPHSAANDPVFVVLHSFTDAIFDEWLKRNNPSTDAWPQE
LAPIGHNRMYNMVPFFPPVTNEELFLTAEQLGYNYAVDLSEEEAPVWSTTLSVVIGILGAFVLLLGLLAF
LQYRRLRKGYAPLMETGLSSKRYTEEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH