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Report for CCDS2729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2729.1 Public Homo sapiens 3 LIMD1 24 110 108 CCDS HistoryNCBI Gene:8994Re-query CCDS DB by CCDS ID:2729.1Re-query CCDS DB by GeneID:8994See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2729.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273317.5 ENSP00000273317.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000273317.5Link to Ensembl Protein Viewer:ENSP00000273317.4Re-query CCDS DB by Nucleotide ID:ENST00000273317Re-query CCDS DB by Protein ID:ENSP00000273317
Original member Current member NCBI NM_014240.3 NP_055055.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014240.3Link to Protein Sequence:NP_055055.1Re-query CCDS DB by Nucleotide ID:NM_014240Re-query CCDS DB by Protein ID:NP_055055Link to BLAST:NP_055055.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055055.1 676 Q9UGP4 676 100% 0 0

Chromosomal Locations for CCDS 2729.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 45594880 45596287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45636150 45636251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45665650 45665717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45668294 45668356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45672690 45672820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45673454 45673505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45674343 45674411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45676922 45677059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGGATAAGTATGACGACCTGGGCCTGGAGGCCAGTAAATTCATCGAGGACCTGAACATGTATGAGGCCT
CTAAGGATGGGCTCTTCCGAGTGGACAAGGGTGCAGGCAACAACCCCGAGTTTGAGGAAACTCGCAGGGT
GTTCGCCACCAAGATGGCCAAAATCCACCTCCAGCAGCAGCAGCAGCAGCTCCTGCAGGAGGAGACTCTG
CCCAGGGGGAGTAGAGGCCCTGTCAATGGAGGGGGCCGCCTGGGCCCACAGGCCCGTTGGGAAGTTGTGG
GCAGCAAGCTGACTGTGGATGGTGCTGCCAAGCCTCCTCTTGCTGCCTCGACAGGGGCACCTGGGGCAGT
CACCACCCTCGCTGCTGGGCAGCCCCCGTACCCACCGCAGGAGCAGAGATCCAGGCCATACCTGCATGGC
ACGAGGCATGGCAGCCAGGACTGTGGTTCCAGGGAGAGCCTGGCGACTTCTGAGATGTCTGCTTTCCACC
AGCCAGGCCCCTGTGAGGATCCTTCCTGCCTCACTCATGGAGACTATTATGACAACCTCTCCTTGGCAAG
CCCAAAGTGGGGTGACAAACCAGGAGTGTCCCCCAGCATCGGCCTGAGTGTAGGGAGTGGGTGGCCTAGC
TCCCCGGGGAGTGACCCACCACTGCCCAAACCCTGCGGGGACCATCCCCTAAATCACCGACAGCTCTCCC
TGAGCTCCAGCAGGTCTTCTGAGGGTAGCCTCGGTGGTCAGAATAGTGGCATTGGTGGCCGCAGCAGCGA
GAAGCCAACAGGCCTTTGGTCCACTGCCTCCTCCCAGCGGGTGAGCCCTGGCCTGCCTTCCCCAAACTTG
GAGAACGGAGCACCAGCTGTGGGGCCTGTTCAGCCCAGGACCCCTTCTGTGTCAGCACCCTTGGCCCTGA
GCTGCCCCAGGCAAGGAGGTCTTCCAAGATCAAACTCGGGGCTGGGGGGTGAGGTTTCAGGTGTGATGTC
CAAACCCAATGTGGACCCCCAACCCTGGTTCCAGGATGGGCCCAAATCTTACCTTTCCAGTTCTGCCCCG
TCATCCTCGCCAGCTGGTCTGGACGGTTCACAGCAGGGTGCGGTCCCTGGGCTGGGGCCGAAGCCTGGCT
GCACAGACCTTGGCACTGGTCCCAAGCTCAGCCCCACCAGTCTTGTCCATCCAGTGATGTCCACCCTGCC
TGAGTTATCTTGTAAAGAGGGTCCCCTGGGCTGGTCTTCTGATGGTAGCCTGGGATCTGTGCTCCTGGAC
AGCCCCAGCTCCCCTAGGGTAAGGCTGCCCTGCCAGCCCCTCGTCCCAGGTCCTGAGCTGAGACCCTCTG
CTGCTGAGTTGAAATTAGAAGCCCTCACCCAACGTCTGGAGCGAGAGATGGATGCTCACCCGAAGGCTGA
TTACTTTGGAGCCTGTGTGAAATGCAGCAAAGGGGTGTTTGGGGCTGGCCAGGCCTGTCAGGCCATGGGG
AACCTCTACCATGACACATGCTTCACCTGTGCAGCTTGCAGCCGGAAGCTGAGAGGAAAAGCCTTTTATT
TTGTCAACGGCAAAGTGTTTTGTGAAGAAGACTTCCTGTACTCTGGTTTCCAGCAGTCGGCTGACAGGTG
TTTTCTTTGTGGACATCTGATCATGGACATGATCCTGCAAGCCCTGGGGAAGTCCTACCACCCCGGCTGT
TTCCGCTGTGTCATCTGTAATGAGTGTTTGGATGGGGTGCCCTTCACCGTGGACTCAGAGAACAAGATCT
ACTGTGTCCGAGATTACCACAAGGTGCTGGCCCCCAAGTGTGCAGCCTGTGGGCTTCCCATCCTTCCACC
TGAGGGCTCAGATGAGACCATCCGTGTCGTGTCCATGGACAGAGACTACCACGTGGAGTGTTACCACTGC
GAGGACTGTGGTCTGGAGCTCAATGATGAAGATGGCCACCGCTGTTATCCGCTGGAGGACCACCTGTTCT
GTCACTCCTGCCACGTGAAGAGGCTGGAGAAGAGACCCTCATCTACAGCCCTTCACCAGCACCACTTCTA
G

Translation (676 aa):
MDKYDDLGLEASKFIEDLNMYEASKDGLFRVDKGAGNNPEFEETRRVFATKMAKIHLQQQQQQLLQEETL
PRGSRGPVNGGGRLGPQARWEVVGSKLTVDGAAKPPLAASTGAPGAVTTLAAGQPPYPPQEQRSRPYLHG
TRHGSQDCGSRESLATSEMSAFHQPGPCEDPSCLTHGDYYDNLSLASPKWGDKPGVSPSIGLSVGSGWPS
SPGSDPPLPKPCGDHPLNHRQLSLSSSRSSEGSLGGQNSGIGGRSSEKPTGLWSTASSQRVSPGLPSPNL
ENGAPAVGPVQPRTPSVSAPLALSCPRQGGLPRSNSGLGGEVSGVMSKPNVDPQPWFQDGPKSYLSSSAP
SSSPAGLDGSQQGAVPGLGPKPGCTDLGTGPKLSPTSLVHPVMSTLPELSCKEGPLGWSSDGSLGSVLLD
SPSSPRVRLPCQPLVPGPELRPSAAELKLEALTQRLEREMDAHPKADYFGACVKCSKGVFGAGQACQAMG
NLYHDTCFTCAACSRKLRGKAFYFVNGKVFCEEDFLYSGFQQSADRCFLCGHLIMDMILQALGKSYHPGC
FRCVICNECLDGVPFTVDSENKIYCVRDYHKVLAPKCAACGLPILPPEGSDETIRVVSMDRDYHVECYHC
EDCGLELNDEDGHRCYPLEDHLFCHSCHVKRLEKRPSSTALHQHHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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