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Report for CCDS27287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27287.1 Public Mus musculus 14 Lacc1 23 108 98 CCDS HistoryNCBI Gene:210808Re-query CCDS DB by CCDS ID:27287.1Re-query CCDS DB by GeneID:210808See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062789.14 ENSMUSP00000059173.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062789.14Link to Ensembl Protein Viewer:ENSMUSP00000059173.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000062789Re-query CCDS DB by Protein ID:ENSMUSP00000059173
Original member Current member NCBI NM_172488.2 NP_766076.1 Accepted alive Link to Nucleotide Sequence:NM_172488.2Link to Protein Sequence:NP_766076.1Re-query CCDS DB by Nucleotide ID:NM_172488Re-query CCDS DB by Protein ID:NP_766076Link to BLAST:NP_766076.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766076.1 430 Q8BZT9 430 100% 0 0

Chromosomal Locations for CCDS 27287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 77029529 77029688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77030737 77030962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77033186 77033351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77034005 77034183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77034793 77035354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGCAGAAGCAGTCTTGATTGATCTCTCTGGTTTACAATTGAATGCACAGAAAAACTGCCATGAGACCT
TACTGGAGACACTGGATGGTATTCACTACCACCACGCTCCCAAGGCCAAGTTCCTTTGCATAATATGTTG
CAGAAATGCCAGCAAGGAAAAGGATGGGGAGTATGGCCTCTGTGAATTGGAAGCAGGAAATGGCTTTTCA
CGTCTCGCGGGAAAATTCGAGACTGTTAGCCATCCCTGCCTGGCTGCCTCTTTGTATACAATTAAACAAA
AAATTGATGAAGAAAATCTGAGCTGCATTAAGGTGATTGTCCCCGAGCACAGGAAACTGTTAATGAAGGC
TTACGTTGGTCAACTCTTCACCGAGGTGTATGAGTTTGAGTTTGAAGATCTACAGGGAGCTTGGAGGGAT
AGCCTTTTGAAACCATCCACTGGAATAAACGTGACCACAACTCAAGAACTAGAAGACATCCAGCATGAAA
TAGAAACATACTTGAGAAGCCTGCCAGCGCTGAAAGGGGACCTAACTATTGTCACATCTCCTCTGATCCC
AGACAACTTCCTGCATGGATTTACCACACGGACAGGGGGCATATCTTCCGTACCCACTCTCAGCTCCCTC
AATCTTTTCAGTAGTTCCAAAAGGAGAGATCCCAAAGTGGTTGTTCAAGAAAATGTTCGCAGGTTGGCAA
ATGCTGCCGGATTTAACGCAGAGAAATTTTACCGAATAAAGACTGATCACGCCAGTGAAGTGTGGGTTAT
GGGGAAGAAGGAGCCTGAATCTTACGATGGGATCGTCACAAATCAGAGAGGAGTCACAATCACTGCTCTT
GGCGCCGACTGTATACCCATCGTCTTCGCAGATCCTGTGAAAAAGGCATGTGGGGTTGCTCACTCCGGCT
GGAAAGGTACATTGTTGGGTGTGGCTATGGCTACTGTGAATGCTATGATAGCAGAATATGGCTGTGATGT
GGAAGACATTATTGTTGTTCTGGGACCGTCAGTGGGTTCTTGCTGCTTCACTCTTCCCAAAGAATCAGCA
GTCTCCTTTCACAGTCTTCATCCTTCATGTGTGAGACACTTTGACTCACCGAGACCCTACGTTGACATCC
GAAAAGCCACCAGGATTCTTCTAGAAAGAGGAGGAATTCTTCCACAGAACATTCAAGACCAGAAGGAAGA
TCTTGACCTCTGCACGTCCTGCCATCCTGAGAAGTTTTTCTCCCATGTCCGCGATGGCCTTAACTTCGGT
ACACAGATTGGCTTCATATCCCTTAGAGAATGA

Translation (430 aa):
MAEAVLIDLSGLQLNAQKNCHETLLETLDGIHYHHAPKAKFLCIICCRNASKEKDGEYGLCELEAGNGFS
RLAGKFETVSHPCLAASLYTIKQKIDEENLSCIKVIVPEHRKLLMKAYVGQLFTEVYEFEFEDLQGAWRD
SLLKPSTGINVTTTQELEDIQHEIETYLRSLPALKGDLTIVTSPLIPDNFLHGFTTRTGGISSVPTLSSL
NLFSSSKRRDPKVVVQENVRRLANAAGFNAEKFYRIKTDHASEVWVMGKKEPESYDGIVTNQRGVTITAL
GADCIPIVFADPVKKACGVAHSGWKGTLLGVAMATVNAMIAEYGCDVEDIIVVLGPSVGSCCFTLPKESA
VSFHSLHPSCVRHFDSPRPYVDIRKATRILLERGGILPQNIQDQKEDLDLCTSCHPEKFFSHVRDGLNFG
TQIGFISLRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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